C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SIK family kinase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120463 Sik3-005 ENSMUSG00000034135 10090 + 9:46012864-46222275 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonOvaryPlacentaTestisENSMUST00000120463
Transcript ID Breast Colon Ovary Placenta Testis
ENSMUST00000120463 0.852±0.00 1.231±0.00 2.454±0.00 1.371±0.00 4.995±1.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RC CIL_0007RC_0002 VISTA 9:45818249-46421546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001958 IMP endochondral ossification
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0006468 IEA protein phosphorylation
GO:0032880 IMP regulation of protein localization
GO:0035108 IMP limb morphogenesis
GO:0035264 IMP multicellular organism growth
GO:0048705 IMP skeletal system morphogenesis
GO:0060351 IMP cartilage development involved in endochondral bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000122372 SIK3-201 protein_coding Danio_rerio 0 436
ENSDART00000129547 CABZ01087568.1-201 protein_coding Danio_rerio 0.000002 60
ENST00000375300 SIK3-001 protein_coding Homo_sapiens 0 4793
ENST00000413553 SIK3-003 protein_coding Homo_sapiens 0 1923
ENST00000415541 SIK3-013 nonsense_mediated_decay Homo_sapiens 0 2663
ENST00000445177 SIK3-002 protein_coding Homo_sapiens 0 2508
ENST00000446921 SIK3-014 protein_coding Homo_sapiens 0 1386
ENST00000465421 SIK3-005 retained_intron Homo_sapiens 0 1284
ENST00000472648 SIK3-010 retained_intron Homo_sapiens 0 267
ENST00000480222 SIK3-011 retained_intron Homo_sapiens 0 313
ENST00000480468 SIK3-006 retained_intron Homo_sapiens 0 1465
ENST00000485363 SIK3-007 processed_transcript Homo_sapiens 0 675
ENST00000488337 SIK3-004 processed_transcript Homo_sapiens 0 1284
ENST00000497049 SIK3-008 processed_transcript Homo_sapiens 0 802

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