C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: rhomboid domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034175 Rhbdd3 10090 + 11:5098926-5106093 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036320 Rhbdd3-002 5099439-5106091 protein_coding
  ENSMUST00000101610 Rhbdd3-001 5098926-5106091 protein_coding
  ENSMUST00000109878 Rhbdd3-201 5100157-5106091 protein_coding
  ENSMUST00000129016 Rhbdd3-009 5100237-5106093 processed_transcript
  ENSMUST00000134267 Rhbdd3-005 5099433-5103349 protein_coding
  ENSMUST00000137370 Rhbdd3-008 5099077-5100587 processed_transcript
  ENSMUST00000139742 Rhbdd3-006 5099608-5103260 protein_coding
  ENSMUST00000146879 Rhbdd3-007 5099273-5100507 processed_transcript
  ENSMUST00000148761 Rhbdd3-004 5100170-5105228 protein_coding
  ENSMUST00000150632 Rhbdd3-003 5099476-5103254 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeHeartKidneyLiverTestisENSMUST00000109878
Transcript ID Adipose Heart Kidney Liver Testis
ENSMUST00000109878 12.675±0.68 11.383±0.57 12.436±0.00 10.036±0.91 53.542±6.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VR CIL_0003VR_0002 CGP 11:5069689-5106093
CIL_0004MN CIL_0004MN_0002 CGP 11:5098926-5152257

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000165 IDA MAPK cascade
GO:0001889 IMP liver development
GO:0002673 IMP regulation of acute inflammatory response
GO:0004252 IEA serine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0006508 IEA proteolysis
GO:0009410 IMP response to xenobiotic stimulus
GO:0016021 IEA integral component of membrane
GO:0032815 IMP negative regulation of natural killer cell activation
GO:0045732 IDA positive regulation of protein catabolic process
GO:0050708 IMP regulation of protein secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079816 rhbdd3 rhomboid domain containing 3 protein_coding Danio_rerio
ENSG00000100263 RHBDD3 rhomboid domain containing 3 protein_coding Homo_sapiens

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