C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: rhomboid domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000101610 Rhbdd3-001 ENSMUSG00000034175 10090 + 11:5098926-5106091 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VR CIL_0003VR_0002 CGP 11:5069689-5106093
CIL_0004MN CIL_0004MN_0002 CGP 11:5098926-5152257

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000165 IDA MAPK cascade
GO:0001889 IMP liver development
GO:0002673 IMP regulation of acute inflammatory response
GO:0004252 IEA serine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0006508 IEA proteolysis
GO:0009410 IMP response to xenobiotic stimulus
GO:0016021 IEA integral component of membrane
GO:0032815 IMP negative regulation of natural killer cell activation
GO:0045732 IDA positive regulation of protein catabolic process
GO:0050708 IMP regulation of protein secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216085 RHBDD3-001 protein_coding Homo_sapiens 0 852
ENST00000331029 EWSR1-007 protein_coding Homo_sapiens 2e-18 99
ENST00000332050 EWSR1-201 protein_coding Homo_sapiens 0 195
ENST00000397938 EWSR1-001 protein_coding Homo_sapiens 0 195
ENST00000406335 RHBDD3-006 protein_coding Homo_sapiens 0 375
ENST00000406548 EWSR1-002 protein_coding Homo_sapiens 4e-25 121
ENST00000414672 RHBDD3-005 protein_coding Homo_sapiens 0 547
ENST00000415761 EWSR1-017 protein_coding Homo_sapiens 5e-19 99
ENST00000436425 EWSR1-012 protein_coding Homo_sapiens 2e-32 145
ENST00000437155 EWSR1-013 protein_coding Homo_sapiens 4e-20 104
ENST00000444626 EWSR1-016 protein_coding Homo_sapiens 0 195
ENST00000447973 EWSR1-014 protein_coding Homo_sapiens 2e-32 145
ENST00000485037 EWSR1-003 retained_intron Homo_sapiens 4e-25 121
ENST00000496342 RHBDD3-007 retained_intron Homo_sapiens 0 532

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