C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhomboid domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109878 Rhbdd3-201 ENSMUSG00000034175 10090 + 11:5100157-5106091 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeHeartKidneyLiverTestisENSMUST00000109878
Transcript ID Adipose Heart Kidney Liver Testis
ENSMUST00000109878 12.675±0.68 11.383±0.57 12.436±0.00 10.036±0.91 53.542±6.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VR CIL_0003VR_0002 CGP 11:5069689-5106093
CIL_0004MN CIL_0004MN_0002 CGP 11:5098926-5152257

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000165 IDA MAPK cascade
GO:0001889 IMP liver development
GO:0002673 IMP regulation of acute inflammatory response
GO:0004252 IEA serine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0006508 IEA proteolysis
GO:0009410 IMP response to xenobiotic stimulus
GO:0016021 IEA integral component of membrane
GO:0032815 IMP negative regulation of natural killer cell activation
GO:0045732 IDA positive regulation of protein catabolic process
GO:0050708 IMP regulation of protein secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216085 RHBDD3-001 protein_coding Homo_sapiens 0 852
ENST00000406335 RHBDD3-006 protein_coding Homo_sapiens 0 375
ENST00000414672 RHBDD3-005 protein_coding Homo_sapiens 0 547
ENST00000496342 RHBDD3-007 retained_intron Homo_sapiens 0 532

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