C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034192 Lsm3 10090 + 6:91515928-91522625 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040607 Lsm3-001 91515928-91522625 protein_coding
  ENSMUST00000123569 Lsm3-002 91516047-91517481 retained_intron
  ENSMUST00000126253 Lsm3-003 91515957-91519835 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040607ENSMUST00000126253
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040607 20.506±2.25 4.125±1.86 21.523±4.19 35.882±6.66 13.388±4.54 6.167±0.94 16.115±0.70 12.525±1.13 25.634±27.18 6.552±0.75 10.714±0.95 20.876±23.30 84.066±63.69 21.528±8.77
ENSMUST00000126253 N/A N/A N/A 18.658±0.00 N/A N/A N/A N/A N/A N/A N/A 48.715±0.00 66.298±44.30 50.169±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GU CIL_0007GU_0002 CGP 6:91489305-91522625
CIL_0007GZ CIL_0007GZ_0002 CGP 6:91515928-91759063

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089663 CABZ01028296.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000170860 LSM3 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Homo_sapiens

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