C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007GZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170860-ENSG00000131389 CGP 9606 3:14178358-14489349
GeneTranscriptPositionBiotype
ENSG00000144596 (GRIP2)
glutamate receptor interacting protein 2 		ENST00000413414 (GRIP2-003) 14520692-14540343 retained_intron
ENST00000422481 (GRIP2-002) 14520692-14525983 retained_intron
ENST00000430219 (GRIP2-004) 14491170-14512858 nonsense_mediated_decay
ENST00000619221 (GRIP2-201) 14489111-14542081 protein_coding
ENST00000621039 (GRIP2-001) 14489111-14540374 protein_coding
ENSG00000154767 (XPC)
xeroderma pigmentosum, complementation group C 		ENST00000285021 (XPC-001) 14145147-14178783 protein_coding
ENST00000427795 (XPC-006) 14147467-14148928 retained_intron
ENST00000452172 (XPC-004) 14164907-14170614 retained_intron
ENST00000455144 (XPC-005) 14164366-14170460 retained_intron
ENST00000476581 (XPC-002) 14145729-14178601 nonsense_mediated_decay
ENST00000477324 (XPC-008) 14158807-14167267 retained_intron
ENST00000511155 (XPC-007) 14168271-14178621 protein_coding
ENSG00000170860 (LSM3)
LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) 		ENST00000306024 (LSM3-001) 14178358-14201119 protein_coding
ENSG00000251576 (LINC01267)
long intergenic non-protein coding RNA 1267 		ENST00000502417 (LINC01267-001) 14348451-14352568 lincRNA
ENSG00000255021 (RP11-536I6.2)
 ENST00000525575 (RP11-536I6.2-001) 14272373-14303845 lincRNA
CIL_0007GZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034192-ENSMUSG00000030096 CGP 10090 6:91515928-91759063
GeneTranscriptPositionBiotype
ENSMUSG00000030096 (Slc6a6)
solute carrier family 6 (neurotransmitter transporter, taurine), member 6 		ENSMUST00000032185 (Slc6a6-201) 91684067-91759063 protein_coding
ENSMUSG00000034192 (Lsm3)
LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) 		ENSMUST00000040607 (Lsm3-001) 91515928-91522625 protein_coding
ENSMUST00000123569 (Lsm3-002) 91516047-91517481 retained_intron
ENSMUST00000126253 (Lsm3-003) 91515957-91519835 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007GZ_0001ENSG00000144596ENST00000413414ENST00000422481ENST00000430219ENST00000619221ENST00000621039ENSG00000154767ENST00000285021ENST00000427795ENST00000452172ENST00000455144ENST00000476581ENST00000477324ENST00000511155ENSG00000170860ENST00000306024ENSG00000251576ENST00000502417ENSG00000255021ENST00000525575CIL_0007GZ_0002ENSMUSG00000030096ENSMUST00000032185ENSMUSG00000034192ENSMUST00000040607ENSMUST00000123569ENSMUST00000126253
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007GZ_0001ENSG00000144596ENST00000413414ENST00000430219ENST00000621039ENSG00000154767ENST00000285021ENSG00000170860ENST00000306024ENSG00000251576ENST00000502417ENSG00000255021ENST00000525575CIL_0007GZ_0002ENSMUSG00000030096ENSMUST00000032185ENSMUSG00000034192ENSMUST00000040607ENSMUST00000126253
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144596 ENST00000413414 N/A N/A N/A N/A N/A 0.571±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430219 N/A N/A N/A 0.730±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.809±0.00 0.920±0.00
ENST00000619221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621039 N/A N/A N/A 0.733±0.42 N/A 0.322±0.00 1.291±0.97 0.031±0.00 N/A N/A 1.390±0.00 N/A 1.127±0.00 0.982±0.00
ENSG00000154767 ENST00000285021 N/A N/A N/A 1.824±0.00 3.071±0.00 2.105±0.00 N/A 6.281±0.00 1.911±0.37 2.982±0.00 N/A 9.877±7.54 8.635±0.57 N/A
ENST00000427795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170860 ENST00000306024 8.407±0.00 10.716±0.00 1.965±0.00 8.071±0.87 7.556±3.46 6.387±3.30 5.452±2.57 7.639±1.75 3.869±0.48 5.067±2.39 4.497±0.80 10.636±8.27 18.241±11.90 27.933±10.90
ENSG00000251576 ENST00000502417 0.008±0.00 0.031±0.00 N/A N/A N/A N/A N/A N/A 0.007±0.00 0.175±0.00 N/A 0.024±0.00 0.023±0.00 0.046±0.00
ENSG00000255021 ENST00000525575 0.184±0.00 0.969±0.00 1.692±0.00 0.712±0.00 0.198±0.00 0.326±0.30 0.295±0.00 0.866±0.00 0.027±0.00 0.154±0.10 N/A 0.149±0.02 0.141±0.04 0.396±0.13
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030096 ENSMUST00000032185 21.766±6.00 102.806±21.84 19.385±3.28 18.676±4.03 21.077±3.76 24.895±3.30 6.878±6.28 64.382±5.61 11.820±7.83 46.198±4.17 18.183±2.00 39.224±7.03 24.825±16.51 6.001±2.99
ENSMUSG00000034192 ENSMUST00000040607 20.506±2.25 4.125±1.86 21.523±4.19 35.882±6.66 13.388±4.54 6.167±0.94 16.115±0.70 12.525±1.13 25.634±27.18 6.552±0.75 10.714±0.95 20.876±23.30 84.066±63.69 21.528±8.77
ENSMUST00000123569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126253 N/A N/A N/A 18.658±0.00 N/A N/A N/A N/A N/A N/A N/A 48.715±0.00 66.298±44.30 50.169±0.00

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