C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126253 Lsm3-003 ENSMUSG00000034192 10090 + 6:91515957-91519835 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000126253
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000126253 18.658±0.00 48.715±0.00 66.298±44.30 50.169±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GU CIL_0007GU_0002 CGP 6:91489305-91522625
CIL_0007GZ CIL_0007GZ_0002 CGP 6:91515928-91759063

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306024 LSM3-001 protein_coding Homo_sapiens 0 383
ENST00000436601 LSM3P3-001 processed_pseudogene Homo_sapiens 0 294
ENST00000551246 LSM3P2-001 processed_pseudogene Homo_sapiens 0 244

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