C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040607 Lsm3-001 ENSMUSG00000034192 10090 + 6:91515928-91522625 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040607
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040607 20.506±2.25 4.125±1.86 21.523±4.19 35.882±6.66 13.388±4.54 6.167±0.94 16.115±0.70 12.525±1.13 25.634±27.18 6.552±0.75 10.714±0.95 20.876±23.30 84.066±63.69 21.528±8.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GU CIL_0007GU_0002 CGP 6:91489305-91522625
CIL_0007GZ CIL_0007GZ_0002 CGP 6:91515928-91759063

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306024 LSM3-001 protein_coding Homo_sapiens 0 477
ENST00000436601 LSM3P3-001 processed_pseudogene Homo_sapiens 0 337
ENST00000551246 LSM3P2-001 processed_pseudogene Homo_sapiens 0 270

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