C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: short chain dehydrogenase/reductase family 42E, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034308 Sdr42e1 10090 - 8:117661399-117673689 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037955 Sdr42e1-003 117661399-117671547 protein_coding
  ENSMUST00000173522 Sdr42e1-001 117661402-117673689 protein_coding
  ENSMUST00000174450 Sdr42e1-002 117663333-117673689 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037955ENSMUST00000173522ENSMUST00000174450
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037955 N/A 0.143±0.00 N/A 1.350±0.00 N/A N/A 0.157±0.00 N/A 1.756±0.00 N/A N/A 0.479±0.13 2.066±0.70 0.362±0.00
ENSMUST00000173522 4.438±1.43 1.151±0.23 23.537±6.50 0.407±0.03 5.425±0.74 13.865±0.94 1.128±0.46 3.311±0.44 36.446±33.10 3.709±1.24 0.209±0.03 2.528±0.43 5.276±2.14 1.539±0.68
ENSMUST00000174450 N/A N/A N/A N/A N/A N/A 0.767±0.03 N/A N/A N/A 0.238±0.00 1.008±0.04 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Z3 CIL_0001Z3_0002 CGP 8:117498291-117673689
CIL_0001X5 CIL_0001X5_0002 CGP 8:117661399-117759029

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003854 IEA 3-beta-hydroxy-delta5-steroid dehydrogenase activity
GO:0005575 ND cellular_component
GO:0006694 IEA steroid biosynthetic process
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003397 sdr42e1 short chain dehydrogenase/reductase family 42E, member 1 protein_coding Danio_rerio
ENSG00000184860 SDR42E1 short chain dehydrogenase/reductase family 42E, member 1 protein_coding Homo_sapiens

Loading