C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin-conjugating enzyme E2F (putative)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034343 Ube2f 10090 + 1:91250304-91290337 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000059743 Ube2f-001 91250311-91285740 protein_coding
  ENSMUST00000171112 Ube2f-004 91250566-91285927 protein_coding
  ENSMUST00000171165 Ube2f-002 91250337-91290337 protein_coding
  ENSMUST00000178627 Ube2f-201 91250319-91286025 protein_coding
  ENSMUST00000185697 Ube2f-005 91283652-91285016 retained_intron
  ENSMUST00000185950 Ube2f-009 91276111-91285391 retained_intron
  ENSMUST00000187494 Ube2f-008 91274964-91276551 retained_intron
  ENSMUST00000188576 Ube2f-007 91250304-91275479 retained_intron
  ENSMUST00000189589 Ube2f-010 91264587-91276443 retained_intron
  ENSMUST00000191368 Ube2f-003 91250365-91285773 protein_coding
  ENSMUST00000191533 Ube2f-006 91250656-91265237 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059743ENSMUST00000171112ENSMUST00000171165ENSMUST00000178627ENSMUST00000185950ENSMUST00000188576ENSMUST00000191368ENSMUST00000191533
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059743 N/A 6.158±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171112 N/A 3.355±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.772±0.96
ENSMUST00000171165 2.332±0.59 2.309±0.47 2.878±0.33 2.007±0.10 2.308±0.91 2.309±0.24 1.669±0.15 1.839±0.12 1.808±0.41 2.351±0.16 2.836±0.20 2.228±1.01 1.562±0.35 2.014±0.00
ENSMUST00000178627 15.081±1.43 9.661±2.61 19.803±0.52 13.812±4.28 18.061±4.86 15.602±1.38 15.733±1.80 16.912±0.92 21.138±8.69 12.724±1.17 14.852±1.81 12.017±2.68 29.480±5.97 26.109±10.37
ENSMUST00000185950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.445±0.00
ENSMUST00000188576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.011±0.00 N/A N/A
ENSMUST00000191368 5.200±0.00 N/A 11.054±0.00 N/A 7.585±0.00 N/A 4.381±0.00 N/A 11.038±3.87 N/A 5.511±0.67 5.362±0.25 10.039±2.11 11.666±3.72
ENSMUST00000191533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 59.872±10.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RW CIL_0007RW_0002 VISTA 1:90676298-91284359
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0003NH CIL_0003NH_0002 CGP 1:91179822-91290337
CIL_0003NI CIL_0003NI_0002 CGP 1:91250304-91321075

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0019788 IMP NEDD8 ligase activity
GO:0045116 IEA protein neddylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025754 ube2f ubiquitin-conjugating enzyme E2F (putative) protein_coding Danio_rerio
ENSG00000184182 UBE2F ubiquitin-conjugating enzyme E2F (putative) protein_coding Homo_sapiens
ENSG00000258984 UBE2F-SCLY UBE2F-SCLY readthrough (NMD candidate) protein_coding Homo_sapiens

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