C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-conjugating enzyme E2F (putative)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000191368 Ube2f-003 ENSMUSG00000034343 10090 + 1:91250365-91285773 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000191368
Transcript ID Adipose Bladder Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000191368 5.200±0.00 11.054±0.00 7.585±0.00 4.381±0.00 11.038±3.87 5.511±0.67 5.362±0.25 10.039±2.11 11.666±3.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RW CIL_0007RW_0002 VISTA 1:90676298-91284359
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0003NH CIL_0003NH_0002 CGP 1:91179822-91290337
CIL_0003NI CIL_0003NI_0002 CGP 1:91250304-91321075

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0019788 IMP NEDD8 ligase activity
GO:0045116 IEA protein neddylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272930 UBE2F-001 protein_coding Homo_sapiens 0 1083
ENST00000409332 UBE2F-004 protein_coding Homo_sapiens 0 802
ENST00000409633 UBE2F-011 protein_coding Homo_sapiens 0 632
ENST00000409953 UBE2F-020 protein_coding Homo_sapiens 0 952
ENST00000414443 UBE2F-201 protein_coding Homo_sapiens 0 806
ENST00000416292 UBE2F-010 protein_coding Homo_sapiens 0 472
ENST00000417231 UBE2F-013 nonsense_mediated_decay Homo_sapiens 0 817
ENST00000433241 UBE2F-016 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000433568 UBE2F-008 nonsense_mediated_decay Homo_sapiens 0 283
ENST00000434137 UBE2F-023 protein_coding Homo_sapiens 0 520
ENST00000434655 UBE2F-017 protein_coding Homo_sapiens 0 749
ENST00000439338 UBE2F-019 nonsense_mediated_decay Homo_sapiens 0 660
ENST00000439780 UBE2F-018 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000440223 UBE2F-006 nonsense_mediated_decay Homo_sapiens 0 233
ENST00000441728 UBE2F-007 nonsense_mediated_decay Homo_sapiens 0 684
ENST00000445676 UBE2F-014 nonsense_mediated_decay Homo_sapiens 0 621
ENST00000448502 UBE2F-009 protein_coding Homo_sapiens 0 281
ENST00000449191 UBE2F-SCLY-002 nonsense_mediated_decay Homo_sapiens 0 401
ENST00000449891 UBE2F-SCLY-001 nonsense_mediated_decay Homo_sapiens 0 281
ENST00000454786 UBE2F-002 nonsense_mediated_decay Homo_sapiens 0 752
ENST00000455999 UBE2F-012 nonsense_mediated_decay Homo_sapiens 0 414
ENST00000472479 UBE2F-003 retained_intron Homo_sapiens 0 457
ENST00000480828 UBE2F-021 retained_intron Homo_sapiens 0 684
ENST00000482096 UBE2F-022 retained_intron Homo_sapiens 0 233
ENST00000566646 UBE2FP2-001 processed_pseudogene Homo_sapiens 0 401
ENST00000612130 UBE2F-202 protein_coding Homo_sapiens 0 1083
ENST00000619760 C20orf194-002 processed_transcript Homo_sapiens 0 747

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