C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin-conjugating enzyme E2F (putative)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000184182 UBE2F 9606 + 2:237966827-238042782 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272930 UBE2F-001 237966955-238042595 protein_coding
  ENST00000409332 UBE2F-004 237967082-238041917 protein_coding
  ENST00000409633 UBE2F-011 237967014-238041545 protein_coding
  ENST00000409953 UBE2F-020 237967081-238041770 protein_coding
  ENST00000414443 UBE2F-201 237966955-238042782 protein_coding
  ENST00000416292 UBE2F-010 237967014-238041293 protein_coding
  ENST00000417231 UBE2F-013 237967026-238041542 nonsense_mediated_decay
  ENST00000433241 UBE2F-016 237967080-238041605 nonsense_mediated_decay
  ENST00000433568 UBE2F-008 237967014-238016630 nonsense_mediated_decay
  ENST00000434137 UBE2F-023 237973095-238035922 protein_coding
  ENST00000434655 UBE2F-017 237968793-238041295 protein_coding
  ENST00000439338 UBE2F-019 237967040-238041415 nonsense_mediated_decay
  ENST00000439780 UBE2F-018 237967060-238041320 nonsense_mediated_decay
  ENST00000440223 UBE2F-006 237966827-238032255 nonsense_mediated_decay
  ENST00000441728 UBE2F-007 237966945-238041886 nonsense_mediated_decay
  ENST00000445676 UBE2F-014 237967028-238041692 nonsense_mediated_decay
  ENST00000448502 UBE2F-009 237967014-238030595 protein_coding
  ENST00000454786 UBE2F-002 237967075-238041739 nonsense_mediated_decay
  ENST00000455999 UBE2F-012 237967018-238041480 nonsense_mediated_decay
  ENST00000472479 UBE2F-003 238035129-238041933 retained_intron
  ENST00000480828 UBE2F-021 238025261-238041783 retained_intron
  ENST00000482096 UBE2F-022 238025339-238032669 retained_intron
  ENST00000612130 UBE2F-202 237968793-238042782 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272930ENST00000409332ENST00000409633ENST00000409953ENST00000417231ENST00000441728ENST00000445676ENST00000455999ENST00000480828
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272930 6.557±0.00 5.460±0.00 N/A 4.291±0.00 5.421±0.00 2.855±1.83 3.187±0.00 4.504±1.50 3.376±1.07 3.413±1.22 3.259±0.00 5.775±1.16 7.554±0.14 10.867±0.00
ENST00000409332 N/A 7.909±0.00 N/A N/A 9.114±0.00 6.210±0.00 7.541±0.00 7.043±0.00 6.182±0.00 3.651±1.38 4.343±2.54 14.055±0.00 9.780±2.39 14.405±0.02
ENST00000409633 N/A N/A N/A N/A N/A N/A 7.946±0.00 N/A N/A 8.625±0.00 10.567±0.00 N/A 11.573±0.00 N/A
ENST00000409953 N/A N/A N/A N/A 4.629±0.00 6.522±0.00 N/A N/A N/A N/A N/A 9.971±0.10 13.624±2.88 N/A
ENST00000417231 N/A N/A N/A 3.447±0.00 N/A N/A 1.244±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000441728 N/A N/A N/A 10.578±0.00 N/A 6.381±0.00 2.489±1.65 N/A N/A N/A N/A N/A N/A 13.324±0.00
ENST00000445676 11.591±0.00 11.377±0.00 N/A N/A 10.021±0.00 N/A N/A N/A N/A N/A N/A 19.603±0.00 21.461±0.00 20.839±0.00
ENST00000455999 N/A N/A N/A N/A N/A N/A N/A 12.237±0.00 N/A 10.206±0.00 N/A N/A N/A N/A
ENST00000480828 N/A N/A 2.227±0.00 5.075±0.00 N/A 2.492±0.00 1.432±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D3 CIL_0008D3_0001 VISTA 2:237594726-238198955
CIL_0003NH CIL_0003NH_0001 CGP 2:237858893-238042782

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0008152 IEA metabolic process
GO:0016881 IEA acid-amino acid ligase activity
GO:0019788 IDA NEDD8 ligase activity
GO:0045116 IEA protein neddylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025754 ube2f ubiquitin-conjugating enzyme E2F (putative) protein_coding Danio_rerio
ENSMUSG00000034343 Ube2f ubiquitin-conjugating enzyme E2F (putative) protein_coding Mus_musculus
ENSMUSG00000059301 Gm5434 predicted gene 5434 protein_coding Mus_musculus

Loading