C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003NH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132329-ENSG00000184182 CGP 9606 2:237858893-238042782
GeneTranscriptPositionBiotype
ENSG00000132329 (RAMP1)
receptor (G protein-coupled) activity modifying protein 1 		ENST00000254661 (RAMP1-001) 237859544-237912114 protein_coding
ENST00000403885 (RAMP1-002) 237859976-237912010 protein_coding
ENST00000404910 (RAMP1-003) 237858893-237912010 protein_coding
ENST00000409726 (RAMP1-004) 237859623-237911956 protein_coding
ENSG00000184182 (UBE2F)
ubiquitin-conjugating enzyme E2F (putative) 		ENST00000272930 (UBE2F-001) 237966955-238042595 protein_coding
ENST00000409332 (UBE2F-004) 237967082-238041917 protein_coding
ENST00000409633 (UBE2F-011) 237967014-238041545 protein_coding
ENST00000409953 (UBE2F-020) 237967081-238041770 protein_coding
ENST00000414443 (UBE2F-201) 237966955-238042782 protein_coding
ENST00000416292 (UBE2F-010) 237967014-238041293 protein_coding
ENST00000417231 (UBE2F-013) 237967026-238041542 nonsense_mediated_decay
ENST00000433241 (UBE2F-016) 237967080-238041605 nonsense_mediated_decay
ENST00000433568 (UBE2F-008) 237967014-238016630 nonsense_mediated_decay
ENST00000434137 (UBE2F-023) 237973095-238035922 protein_coding
ENST00000434655 (UBE2F-017) 237968793-238041295 protein_coding
ENST00000439338 (UBE2F-019) 237967040-238041415 nonsense_mediated_decay
ENST00000439780 (UBE2F-018) 237967060-238041320 nonsense_mediated_decay
ENST00000440223 (UBE2F-006) 237966827-238032255 nonsense_mediated_decay
ENST00000441728 (UBE2F-007) 237966945-238041886 nonsense_mediated_decay
ENST00000445676 (UBE2F-014) 237967028-238041692 nonsense_mediated_decay
ENST00000448502 (UBE2F-009) 237967014-238030595 protein_coding
ENST00000454786 (UBE2F-002) 237967075-238041739 nonsense_mediated_decay
ENST00000455999 (UBE2F-012) 237967018-238041480 nonsense_mediated_decay
ENST00000472479 (UBE2F-003) 238035129-238041933 retained_intron
ENST00000480828 (UBE2F-021) 238025261-238041783 retained_intron
ENST00000482096 (UBE2F-022) 238025339-238032669 retained_intron
ENST00000612130 (UBE2F-202) 237968793-238042782 protein_coding
ENSG00000251971 (RNU6-1333P)
RNA, U6 small nuclear 1333, pseudogene 		ENST00000516162 (RNU6-1333P-201) 238028971-238029063 snRNA
CIL_0003NH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034353-ENSMUSG00000034343 CGP 10090 1:91179822-91290337
GeneTranscriptPositionBiotype
ENSMUSG00000034343 (Ube2f)
ubiquitin-conjugating enzyme E2F (putative) 		ENSMUST00000059743 (Ube2f-001) 91250311-91285740 protein_coding
ENSMUST00000171112 (Ube2f-004) 91250566-91285927 protein_coding
ENSMUST00000171165 (Ube2f-002) 91250337-91290337 protein_coding
ENSMUST00000178627 (Ube2f-201) 91250319-91286025 protein_coding
ENSMUST00000185697 (Ube2f-005) 91283652-91285016 retained_intron
ENSMUST00000185950 (Ube2f-009) 91276111-91285391 retained_intron
ENSMUST00000187494 (Ube2f-008) 91274964-91276551 retained_intron
ENSMUST00000188576 (Ube2f-007) 91250304-91275479 retained_intron
ENSMUST00000189589 (Ube2f-010) 91264587-91276443 retained_intron
ENSMUST00000191368 (Ube2f-003) 91250365-91285773 protein_coding
ENSMUST00000191533 (Ube2f-006) 91250656-91265237 protein_coding
ENSMUSG00000034353 (Ramp1)
receptor (calcitonin) activity modifying protein 1 		ENSMUST00000097648 (Ramp1-001) 91180046-91225196 protein_coding
ENSMUST00000165855 (Ramp1-002) 91179822-91206790 protein_coding
ENSMUST00000188475 (Ramp1-003) 91180042-91206790 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NH_0001ENSG00000132329ENST00000254661ENST00000403885ENST00000404910ENST00000409726ENSG00000184182ENST00000272930ENST00000409332ENST00000409633ENST00000409953ENST00000414443ENST00000416292ENST00000417231ENST00000433241ENST00000433568ENST00000434137ENST00000434655ENST00000439338ENST00000439780ENST00000440223ENST00000441728ENST00000445676ENST00000448502ENST00000454786ENST00000455999ENST00000472479ENST00000480828ENST00000482096ENST00000612130ENSG00000251971ENST00000516162CIL_0003NH_0002ENSMUSG00000034343ENSMUST00000059743ENSMUST00000171112ENSMUST00000171165ENSMUST00000178627ENSMUST00000185697ENSMUST00000185950ENSMUST00000187494ENSMUST00000188576ENSMUST00000189589ENSMUST00000191368ENSMUST00000191533ENSMUSG00000034353ENSMUST00000097648ENSMUST00000165855ENSMUST00000188475
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NH_0001ENSG00000132329ENST00000254661ENST00000403885ENST00000404910ENST00000409726ENSG00000184182ENST00000272930ENST00000409332ENST00000409633ENST00000409953ENST00000417231ENST00000441728ENST00000445676ENST00000455999ENST00000480828ENSG00000251971ENST00000516162CIL_0003NH_0002ENSMUSG00000034343ENSMUST00000059743ENSMUST00000171112ENSMUST00000171165ENSMUST00000178627ENSMUST00000185950ENSMUST00000188576ENSMUST00000191368ENSMUST00000191533ENSMUSG00000034353ENSMUST00000097648ENSMUST00000165855ENSMUST00000188475
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132329 ENST00000254661 N/A 15.899±0.00 N/A 13.519±7.91 1.038±0.63 27.844±27.10 21.370±19.57 6.892±2.98 17.089±11.59 24.696±0.00 18.807±14.38 29.643±3.65 23.497±11.97 9.537±9.07
ENST00000403885 1.578±0.00 3.250±0.00 1.216±0.00 7.534±2.21 2.205±0.61 9.533±8.47 8.965±6.68 3.614±0.00 5.397±0.44 5.145±4.78 24.057±13.75 7.880±4.83 7.245±2.11 5.111±0.00
ENST00000404910 N/A N/A N/A N/A N/A 2.193±0.00 N/A N/A N/A N/A N/A 5.138±2.16 N/A N/A
ENST00000409726 2.053±0.00 4.600±0.00 N/A 12.064±0.00 N/A 31.565±0.00 N/A 1.874±0.00 N/A N/A N/A 7.716±0.00 N/A 5.706±5.23
ENSG00000184182 ENST00000272930 6.557±0.00 5.460±0.00 N/A 4.291±0.00 5.421±0.00 2.855±1.83 3.187±0.00 4.504±1.50 3.376±1.07 3.413±1.22 3.259±0.00 5.775±1.16 7.554±0.14 10.867±0.00
ENST00000409332 N/A 7.909±0.00 N/A N/A 9.114±0.00 6.210±0.00 7.541±0.00 7.043±0.00 6.182±0.00 3.651±1.38 4.343±2.54 14.055±0.00 9.780±2.39 14.405±0.02
ENST00000409633 N/A N/A N/A N/A N/A N/A 7.946±0.00 N/A N/A 8.625±0.00 10.567±0.00 N/A 11.573±0.00 N/A
ENST00000409953 N/A N/A N/A N/A 4.629±0.00 6.522±0.00 N/A N/A N/A N/A N/A 9.971±0.10 13.624±2.88 N/A
ENST00000414443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417231 N/A N/A N/A 3.447±0.00 N/A N/A 1.244±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000433241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433568 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441728 N/A N/A N/A 10.578±0.00 N/A 6.381±0.00 2.489±1.65 N/A N/A N/A N/A N/A N/A 13.324±0.00
ENST00000445676 11.591±0.00 11.377±0.00 N/A N/A 10.021±0.00 N/A N/A N/A N/A N/A N/A 19.603±0.00 21.461±0.00 20.839±0.00
ENST00000448502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454786 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455999 N/A N/A N/A N/A N/A N/A N/A 12.237±0.00 N/A 10.206±0.00 N/A N/A N/A N/A
ENST00000472479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480828 N/A N/A 2.227±0.00 5.075±0.00 N/A 2.492±0.00 1.432±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000482096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251971 ENST00000516162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.232±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034343 ENSMUST00000059743 N/A 6.158±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171112 N/A 3.355±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.772±0.96
ENSMUST00000171165 2.332±0.59 2.309±0.47 2.878±0.33 2.007±0.10 2.308±0.91 2.309±0.24 1.669±0.15 1.839±0.12 1.808±0.41 2.351±0.16 2.836±0.20 2.228±1.01 1.562±0.35 2.014±0.00
ENSMUST00000178627 15.081±1.43 9.661±2.61 19.803±0.52 13.812±4.28 18.061±4.86 15.602±1.38 15.733±1.80 16.912±0.92 21.138±8.69 12.724±1.17 14.852±1.81 12.017±2.68 29.480±5.97 26.109±10.37
ENSMUST00000185697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.445±0.00
ENSMUST00000187494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.011±0.00 N/A N/A
ENSMUST00000189589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191368 5.200±0.00 N/A 11.054±0.00 N/A 7.585±0.00 N/A 4.381±0.00 N/A 11.038±3.87 N/A 5.511±0.67 5.362±0.25 10.039±2.11 11.666±3.72
ENSMUST00000191533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 59.872±10.64
ENSMUSG00000034353 ENSMUST00000097648 3.548±2.07 8.860±1.35 2.100±0.27 5.404±6.60 11.992±4.77 69.501±7.92 4.835±2.66 0.917±0.14 3.052±0.51 17.054±5.39 10.556±0.92 25.558±14.88 3.061±1.34 2.521±2.33
ENSMUST00000165855 N/A 2.685±0.43 N/A 0.288±0.00 N/A N/A N/A 0.429±0.00 0.829±0.00 N/A N/A 9.713±1.47 N/A N/A
ENSMUST00000188475 N/A 4.945±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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