C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubby like protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034377 Tulp4 10090 + 17:6106437-6251128 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039655 Tulp4-001 6138148-6240628 protein_coding
  ENSMUST00000126982 Tulp4-009 6107400-6122344 processed_transcript
  ENSMUST00000137063 Tulp4-008 6232652-6251128 protein_coding
  ENSMUST00000141059 Tulp4-007 6138148-6226841 retained_intron
  ENSMUST00000142030 Tulp4-010 6106479-6206914 protein_coding
  ENSMUST00000144124 Tulp4-011 6118294-6124710 processed_transcript
  ENSMUST00000145340 Tulp4-006 6118294-6123263 processed_transcript
  ENSMUST00000146758 Tulp4-003 6106858-6124835 processed_transcript
  ENSMUST00000149756 Tulp4-002 6106891-6240628 protein_coding
  ENSMUST00000149838 Tulp4-004 6106437-6138792 processed_transcript
  ENSMUST00000151732 Tulp4-012 6106555-6121884 processed_transcript
  ENSMUST00000152672 Tulp4-005 6106858-6138789 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039655ENSMUST00000137063ENSMUST00000146758ENSMUST00000149756
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039655 2.275±0.31 N/A 13.172±9.50 11.857±7.10 1.895±0.00 2.831±0.41 1.815±0.00 3.102±0.50 0.687±0.58 4.097±0.00 8.687±0.39 3.615±2.12 3.130±1.09 12.924±0.14
ENSMUST00000137063 N/A 11.612±1.49 N/A 24.899±0.00 10.854±2.45 8.891±1.29 N/A N/A N/A 11.861±3.06 N/A 16.173±3.60 13.474±0.00 31.608±0.00
ENSMUST00000146758 N/A N/A N/A N/A N/A N/A N/A N/A 0.936±0.20 N/A N/A N/A N/A N/A
ENSMUST00000149756 7.773±1.89 6.644±1.52 23.379±10.82 25.134±12.33 8.364±1.77 7.009±1.67 6.514±0.31 7.861±2.26 1.921±1.25 12.017±2.44 8.146±1.29 11.083±4.23 8.424±3.24 13.855±6.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004W3 CIL_0004W3_0002 CGP 17:6079786-6251128
CIL_0002QL CIL_0002QL_0003 CGP 17:6106437-6305783

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 ISA cytoplasm
GO:0008150 ND biological_process
GO:0016567 IEA protein ubiquitination
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045911 tulp4a tubby like protein 4a protein_coding Danio_rerio
ENSDARG00000063056 tulp4b tubby like protein 4b protein_coding Danio_rerio
ENSG00000130338 TULP4 tubby like protein 4 protein_coding Homo_sapiens

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