C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002QL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000045911-ENSDARG00000045910 CGP 7955 4:41626-96071
GeneTranscriptPositionBiotype
ENSDARG00000045910 (tmem181)
transmembrane protein 181 		ENSDART00000103645 (tmem181-001) 68100-96071 protein_coding
ENSDART00000139832 (tmem181-002) 70245-78257 protein_coding
ENSDART00000142225 (tmem181-003) 68085-73080 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0002QL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000130338-ENSG00000146433 CGP 9606 6:158232236-158635428
GeneTranscriptPositionBiotype
ENSG00000130338 (TULP4)
tubby like protein 4 		ENST00000367094 (TULP4-002) 158312660-158508376 protein_coding
ENST00000367097 (TULP4-001) 158312488-158511828 protein_coding
ENST00000432358 (TULP4-005) 158282263-158312358 processed_transcript
ENST00000613390 (TULP4-004) 158461650-158498693 nonsense_mediated_decay
ENST00000613994 (TULP4-007) 158310364-158312363 processed_transcript
ENST00000616856 (TULP4-003) 158313445-158481538 retained_intron
ENST00000620026 (TULP4-006) 158232236-158312662 processed_transcript
ENSG00000146433 (TMEM181)
transmembrane protein 181 		ENST00000367090 (TMEM181-001) 158536436-158635428 protein_coding
ENSG00000188451 (SRP72P2)
signal recognition particle 72kDa pseudogene 2 		ENST00000344851 (SRP72P2-001) 158237336-158242797 processed_pseudogene
ENSG00000218226 (TATDN2P2)
TatD DNase domain containing 2 pseudogene 2 		ENST00000403590 (TATDN2P2-001) 158609706-158621636 processed_pseudogene
ENSG00000219188 (CACYBPP3)
calcyclin binding protein pseudogene 3 		ENST00000406011 (CACYBPP3-001) 158515605-158516229 processed_pseudogene
ENSG00000243373 (RN7SL173P)
RNA, 7SL, cytoplasmic 173, pseudogene 		ENST00000461853 (RN7SL173P-201) 158437797-158438088 misc_RNA
ENSG00000274023 (RP11-732M18.4)
 ENST00000619713 (RP11-732M18.4-001) 158282841-158428379 sense_overlapping
ENSG00000278571 (MIR7161)
microRNA 7161 		ENST00000612973 (MIR7161-201) 158609707-158609790 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0002QL_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034377-ENSMUSG00000038141 CGP 10090 17:6106437-6305783
GeneTranscriptPositionBiotype
ENSMUSG00000034377 (Tulp4)
tubby like protein 4 		ENSMUST00000039655 (Tulp4-001) 6138148-6240628 protein_coding
ENSMUST00000126982 (Tulp4-009) 6107400-6122344 processed_transcript
ENSMUST00000137063 (Tulp4-008) 6232652-6251128 protein_coding
ENSMUST00000141059 (Tulp4-007) 6138148-6226841 retained_intron
ENSMUST00000142030 (Tulp4-010) 6106479-6206914 protein_coding
ENSMUST00000144124 (Tulp4-011) 6118294-6124710 processed_transcript
ENSMUST00000145340 (Tulp4-006) 6118294-6123263 processed_transcript
ENSMUST00000146758 (Tulp4-003) 6106858-6124835 processed_transcript
ENSMUST00000149756 (Tulp4-002) 6106891-6240628 protein_coding
ENSMUST00000149838 (Tulp4-004) 6106437-6138792 processed_transcript
ENSMUST00000151732 (Tulp4-012) 6106555-6121884 processed_transcript
ENSMUST00000152672 (Tulp4-005) 6106858-6138789 processed_transcript
ENSMUSG00000038141 (Tmem181a)
transmembrane protein 181A 		ENSMUST00000088940 (Tmem181a-201) 6270475-6305783 protein_coding
ENSMUSG00000051639 (Gm5812)
predicted gene 5812 		ENSMUST00000061073 (Gm5812-001) 6121208-6122164 processed_pseudogene
ENSMUSG00000058542 (Gm15590)
predicted gene 15590 		ENSMUST00000078419 (Gm15590-001) 6131854-6132405 processed_pseudogene
ENSMUSG00000077789 (n-R5s26)
nuclear encoded rRNA 5S 26 		ENSMUST00000104601 (n-R5s26-201) 6147419-6147540 rRNA
ENSMUSG00000095869 (Ppp1r2-ps6)
protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 6 		ENSMUST00000179333 (Ppp1r2-ps6-001) 6253903-6254523 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002QL_0001ENSDARG00000045910ENSDART00000103645ENSDART00000139832ENSDART00000142225CIL_0002QL_0002ENSG00000130338ENST00000367094ENST00000367097ENST00000432358ENST00000613390ENST00000613994ENST00000616856ENST00000620026ENSG00000146433ENST00000367090ENSG00000188451ENST00000344851ENSG00000218226ENST00000403590ENSG00000219188ENST00000406011ENSG00000243373ENST00000461853ENSG00000274023ENST00000619713ENSG00000278571ENST00000612973CIL_0002QL_0003ENSMUSG00000034377ENSMUST00000039655ENSMUST00000126982ENSMUST00000137063ENSMUST00000141059ENSMUST00000142030ENSMUST00000144124ENSMUST00000145340ENSMUST00000146758ENSMUST00000149756ENSMUST00000149838ENSMUST00000151732ENSMUST00000152672ENSMUSG00000038141ENSMUST00000088940ENSMUSG00000051639ENSMUST00000061073ENSMUSG00000058542ENSMUST00000078419ENSMUSG00000077789ENSMUST00000104601ENSMUSG00000095869ENSMUST00000179333
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002QL_0001ENSDARG00000045910ENSDART00000103645CIL_0002QL_0002ENSG00000130338ENST00000367094ENST00000367097ENSG00000146433ENST00000367090ENSG00000188451ENST00000344851ENSG00000218226ENST00000403590ENSG00000219188ENST00000406011ENSG00000243373ENST00000461853ENSG00000274023ENST00000619713ENSG00000278571ENST00000612973CIL_0002QL_0003ENSMUSG00000034377ENSMUST00000039655ENSMUST00000137063ENSMUST00000146758ENSMUST00000149756ENSMUSG00000038141ENSMUST00000088940ENSMUSG00000051639ENSMUST00000061073ENSMUSG00000058542ENSMUST00000078419ENSMUSG00000077789ENSMUST00000104601ENSMUSG00000095869ENSMUST00000179333
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000045910 ENSDART00000103645 N/A N/A N/A N/A N/A N/A 2.196±1.14 0.860±0.28 N/A N/A N/A N/A N/A N/A
ENSDART00000139832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130338 ENST00000367094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.774±0.00 N/A N/A N/A
ENST00000367097 1.303±0.00 N/A N/A 5.731±0.47 1.667±0.00 0.865±0.20 0.571±0.11 1.261±0.00 1.369±0.99 1.144±0.00 1.321±0.55 2.608±1.28 0.274±0.11 0.868±0.00
ENST00000432358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000146433 ENST00000367090 5.539±0.00 1.933±0.00 N/A 6.598±0.34 5.056±1.69 3.642±3.04 1.183±0.13 5.541±0.00 2.225±0.00 1.719±0.50 1.364±0.68 10.494±7.41 3.170±1.55 8.486±1.32
ENSG00000188451 ENST00000344851 0.012±0.00 0.123±0.00 0.202±0.00 0.163±0.14 0.154±0.12 0.496±0.00 0.094±0.07 0.049±0.00 0.033±0.00 0.186±0.18 0.207±0.00 0.483±0.68 0.020±0.00 0.051±0.03
ENSG00000218226 ENST00000403590 0.419±0.00 N/A N/A 0.203±0.15 0.132±0.00 0.060±0.00 0.157±0.00 0.101±0.05 0.263±0.26 0.223±0.00 0.323±0.28 0.126±0.00 0.047±0.01 0.157±0.10
ENSG00000219188 ENST00000406011 N/A 0.091±0.00 N/A N/A N/A N/A N/A N/A N/A 0.382±0.00 N/A 0.162±0.00 N/A 0.099±0.00
ENSG00000243373 ENST00000461853 N/A 0.175±0.00 N/A 0.520±0.00 0.338±0.08 0.054±0.00 0.056±0.00 0.236±0.00 0.314±0.00 0.055±0.00 N/A N/A N/A N/A
ENSG00000274023 ENST00000619713 0.141±0.00 0.450±0.00 N/A 0.147±0.00 0.690±0.37 0.198±0.00 0.058±0.01 0.404±0.00 0.185±0.10 0.494±0.41 0.021±0.00 0.321±0.35 0.053±0.00 0.177±0.12
ENSG00000278571 ENST00000612973 N/A N/A N/A N/A N/A N/A N/A N/A 0.349±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034377 ENSMUST00000039655 2.275±0.31 N/A 13.172±9.50 11.857±7.10 1.895±0.00 2.831±0.41 1.815±0.00 3.102±0.50 0.687±0.58 4.097±0.00 8.687±0.39 3.615±2.12 3.130±1.09 12.924±0.14
ENSMUST00000126982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137063 N/A 11.612±1.49 N/A 24.899±0.00 10.854±2.45 8.891±1.29 N/A N/A N/A 11.861±3.06 N/A 16.173±3.60 13.474±0.00 31.608±0.00
ENSMUST00000141059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146758 N/A N/A N/A N/A N/A N/A N/A N/A 0.936±0.20 N/A N/A N/A N/A N/A
ENSMUST00000149756 7.773±1.89 6.644±1.52 23.379±10.82 25.134±12.33 8.364±1.77 7.009±1.67 6.514±0.31 7.861±2.26 1.921±1.25 12.017±2.44 8.146±1.29 11.083±4.23 8.424±3.24 13.855±6.03
ENSMUST00000149838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038141 ENSMUST00000088940 4.157±2.19 11.783±7.91 9.343±1.38 6.583±1.82 3.317±1.09 12.814±2.41 2.495±0.50 1.607±0.57 1.880±0.75 3.916±0.72 1.196±0.35 7.905±5.66 4.054±2.55 4.722±2.33
ENSMUSG00000051639 ENSMUST00000061073 N/A N/A N/A N/A N/A N/A N/A N/A 12.509±8.75 N/A N/A 41.055±3.36 N/A N/A
ENSMUSG00000058542 ENSMUST00000078419 0.811±0.55 0.248±0.09 2.681±1.84 0.367±0.05 0.403±0.25 0.267±0.16 0.220±0.14 1.066±0.60 2.348±3.46 0.471±0.08 N/A 0.433±0.16 0.699±0.16 0.199±0.04
ENSMUSG00000077789 ENSMUST00000104601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.988±0.00 N/A N/A
ENSMUSG00000095869 ENSMUST00000179333 N/A N/A 0.452±0.00 0.159±0.00 N/A N/A N/A N/A 0.065±0.02 N/A N/A N/A 0.010±0.00 1.313±0.27

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