C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC22 vesicle trafficking protein homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043521 Sec22a-001 ENSMUSG00000034473 10090 - 16:35311131-35363918 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043521
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043521 2.112±0.47 3.510±0.59 3.275±2.45 4.048±1.90 3.181±0.46 2.818±0.57 1.747±0.61 1.856±1.34 1.546±0.86 3.370±0.26 1.155±0.18 3.701±0.84 2.855±1.37 2.763±1.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008J4 CIL_0008J4_0002 VISTA 16:35298618-35902946

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309934 SEC22A-002 protein_coding Homo_sapiens 0 1461
ENST00000466519 SEC22A-005 protein_coding Homo_sapiens 0 496
ENST00000466950 SEC22A-007 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000469649 PDIA5-008 nonsense_mediated_decay Homo_sapiens 0 717
ENST00000473494 SEC22A-003 protein_coding Homo_sapiens 0 1315
ENST00000477063 SEC22A-008 processed_transcript Homo_sapiens 0 889
ENST00000480631 SEC22A-004 protein_coding Homo_sapiens 0 649
ENST00000481965 SEC22A-009 protein_coding Homo_sapiens 0 460
ENST00000487572 SEC22A-006 protein_coding Homo_sapiens 0 996
ENST00000491366 SEC22A-010 protein_coding Homo_sapiens 0 455
ENST00000492595 SEC22A-001 protein_coding Homo_sapiens 0 1411

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