C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gastrulation brain homeobox 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034486 Gbx2 10090 - 1:89927956-89931179 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036954 Gbx2-001 89927956-89931179 protein_coding
  ENSMUST00000187633 Gbx2-002 89927966-89929185 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000036954ENSMUST00000187633
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036954 N/A 0.864±0.75 N/A N/A N/A N/A N/A 0.143±0.00 0.134±0.04 0.020±0.00 N/A
ENSMUST00000187633 0.032±0.00 6.782±4.59 0.213±0.08 0.135±0.00 0.047±0.02 0.470±0.16 0.032±0.00 0.152±0.09 0.906±0.39 0.080±0.04 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007U0 CIL_0007U0_0002 VISTA 1:89413750-90014911
CIL_0003RE CIL_0003RE_0002 CGP 1:89454806-89931179
CIL_0007RK CIL_0007RK_0002 VISTA 1:89547708-90149945
CIL_0008K4 CIL_0008K4_0002 VISTA 1:89625517-90226000
CIL_0007XN CIL_0007XN_0002 VISTA 1:89706775-90307806
CIL_0003RD CIL_0003RD_0002 CGP 1:89927956-90014666

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001569 IGI patterning of blood vessels
GO:0001755 IMP neural crest cell migration
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007411 IMP axon guidance
GO:0008283 IMP cell proliferation
GO:0021549 IMP cerebellum development
GO:0021555 IMP midbrain-hindbrain boundary morphogenesis
GO:0021568 IMP rhombomere 2 development
GO:0021794 IMP thalamus development
GO:0021884 IMP forebrain neuron development
GO:0021930 IMP cerebellar granule cell precursor proliferation
GO:0030902 IMP hindbrain development
GO:0030917 IMP midbrain-hindbrain boundary development
GO:0035239 IMP tube morphogenesis
GO:0042472 IMP inner ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0048483 IMP autonomic nervous system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002933 gbx2 gastrulation brain homeo box 2 protein_coding Danio_rerio
ENSG00000168505 GBX2 gastrulation brain homeobox 2 protein_coding Homo_sapiens

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