C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gastrulation brain homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036954 Gbx2-001 ENSMUSG00000034486 10090 - 1:89927956-89931179 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryPlacentaENSMUST00000036954
Transcript ID Brain Muscle Ovary Placenta
ENSMUST00000036954 0.864±0.75 0.143±0.00 0.134±0.04 0.020±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007U0 CIL_0007U0_0002 VISTA 1:89413750-90014911
CIL_0003RE CIL_0003RE_0002 CGP 1:89454806-89931179
CIL_0007RK CIL_0007RK_0002 VISTA 1:89547708-90149945
CIL_0008K4 CIL_0008K4_0002 VISTA 1:89625517-90226000
CIL_0007XN CIL_0007XN_0002 VISTA 1:89706775-90307806
CIL_0003RD CIL_0003RD_0002 CGP 1:89927956-90014666

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001569 IGI patterning of blood vessels
GO:0001755 IMP neural crest cell migration
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007411 IMP axon guidance
GO:0008283 IMP cell proliferation
GO:0021549 IMP cerebellum development
GO:0021555 IMP midbrain-hindbrain boundary morphogenesis
GO:0021568 IMP rhombomere 2 development
GO:0021794 IMP thalamus development
GO:0021884 IMP forebrain neuron development
GO:0021930 IMP cerebellar granule cell precursor proliferation
GO:0030902 IMP hindbrain development
GO:0030917 IMP midbrain-hindbrain boundary development
GO:0035239 IMP tube morphogenesis
GO:0042472 IMP inner ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0048483 IMP autonomic nervous system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000015333 gbx2-001 protein_coding Danio_rerio 0 220
ENST00000297537 GBX1-001 protein_coding Homo_sapiens 4e-17 94
ENST00000306318 GBX2-001 protein_coding Homo_sapiens 0 2041
ENST00000465889 GBX2-002 processed_transcript Homo_sapiens 0 780
ENST00000551105 GBX2-003 protein_coding Homo_sapiens 0 798

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