C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gastrulation brain homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000187633 Gbx2-002 ENSMUSG00000034486 10090 - 1:89927966-89929185 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000187633
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000187633 0.032±0.00 6.782±4.59 0.213±0.08 0.135±0.00 0.047±0.02 0.470±0.16 0.032±0.00 0.152±0.09 0.906±0.39 0.080±0.04 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007U0 CIL_0007U0_0002 VISTA 1:89413750-90014911
CIL_0003RE CIL_0003RE_0002 CGP 1:89454806-89931179
CIL_0007RK CIL_0007RK_0002 VISTA 1:89547708-90149945
CIL_0008K4 CIL_0008K4_0002 VISTA 1:89625517-90226000
CIL_0007XN CIL_0007XN_0002 VISTA 1:89706775-90307806
CIL_0003RD CIL_0003RD_0002 CGP 1:89927956-90014666

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306318 GBX2-001 protein_coding Homo_sapiens 0 1035
ENST00000465889 GBX2-002 processed_transcript Homo_sapiens 0 780
ENST00000551105 GBX2-003 protein_coding Homo_sapiens 0 780

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