C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: drebrin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034675 Dbn1 10090 - 13:55473429-55488111 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021950 Dbn1-001 55473429-55488111 protein_coding
  ENSMUST00000109921 Dbn1-009 55473944-55488061 protein_coding
  ENSMUST00000109923 Dbn1-002 55473429-55488111 protein_coding
  ENSMUST00000124480 Dbn1-006 55481667-55486660 processed_transcript
  ENSMUST00000127867 Dbn1-007 55482280-55483969 retained_intron
  ENSMUST00000135705 Dbn1-003 55475125-55488066 retained_intron
  ENSMUST00000139275 Dbn1-005 55481550-55487633 protein_coding
  ENSMUST00000139516 Dbn1-008 55481378-55482144 retained_intron
  ENSMUST00000175813 Dbn1-010 55481400-55482257 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021950ENSMUST00000109921ENSMUST00000109923ENSMUST00000127867ENSMUST00000135705ENSMUST00000139275ENSMUST00000139516
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021950 N/A N/A 2.377±0.00 18.279±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000109921 17.490±4.42 13.910±3.76 8.921±0.45 170.923±9.11 21.386±2.07 12.684±2.07 2.396±0.48 4.273±1.18 1.675±1.10 5.984±0.83 0.350±0.14 32.618±14.43 3.174±1.53 4.155±0.01
ENSMUST00000109923 7.237±2.67 3.246±0.51 4.285±1.25 110.157±13.50 4.643±0.92 3.231±0.64 0.805±0.19 2.422±0.71 1.051±0.61 2.419±0.44 0.645±0.16 9.276±2.41 2.444±0.79 2.946±0.41
ENSMUST00000127867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.188±5.48
ENSMUST00000135705 N/A N/A N/A 24.455±0.00 N/A N/A N/A N/A N/A N/A N/A 6.272±0.00 1.830±0.27 1.533±0.00
ENSMUST00000139275 N/A N/A N/A 53.597±0.00 N/A N/A N/A N/A N/A N/A N/A 27.250±0.00 10.602±0.00 28.256±0.00
ENSMUST00000139516 N/A N/A N/A 116.340±0.00 N/A N/A N/A N/A N/A N/A N/A 72.372±0.00 9.822±2.85 154.526±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0002 VISTA 13:55104361-55707564
CIL_0000XB CIL_0000XB_0003 CGP 13:55464267-55488111
CIL_0002YE CIL_0002YE_0002 CGP 13:55473429-55513676

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005522 ISS profilin binding
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005921 IDA gap junction
GO:0007015 IDA actin filament organization
GO:0007399 IEA nervous system development
GO:0010643 IMP cell communication by chemical coupling
GO:0010644 IMP cell communication by electrical coupling
GO:0015629 IDA actin cytoskeleton
GO:0016020 IDA membrane
GO:0032507 IMP maintenance of protein location in cell
GO:0048699 IEP generation of neurons
GO:0061351 IEP neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069113 dbn1 drebrin 1 protein_coding Danio_rerio
ENSG00000113758 DBN1 drebrin 1 protein_coding Homo_sapiens

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