C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: drebrin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109921 Dbn1-009 ENSMUSG00000034675 10090 - 13:55473944-55488061 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109921
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109921 17.490±4.42 13.910±3.76 8.921±0.45 170.923±9.11 21.386±2.07 12.684±2.07 2.396±0.48 4.273±1.18 1.675±1.10 5.984±0.83 0.350±0.14 32.618±14.43 3.174±1.53 4.155±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0002 VISTA 13:55104361-55707564
CIL_0000XB CIL_0000XB_0003 CGP 13:55464267-55488111
CIL_0002YE CIL_0002YE_0002 CGP 13:55473429-55513676

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005522 ISS profilin binding
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005921 IDA gap junction
GO:0007015 IDA actin filament organization
GO:0010643 IMP cell communication by chemical coupling
GO:0010644 IMP cell communication by electrical coupling
GO:0015629 IDA actin cytoskeleton
GO:0016020 IDA membrane
GO:0032507 IMP maintenance of protein location in cell
GO:0048699 IEP generation of neurons
GO:0061351 IEP neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000292385 DBN1-002 protein_coding Homo_sapiens 0 2134
ENST00000309007 DBN1-001 protein_coding Homo_sapiens 0 2388
ENST00000393565 DBN1-004 protein_coding Homo_sapiens 0 1288
ENST00000467054 DBN1-012 retained_intron Homo_sapiens 0 571
ENST00000471767 DBN1-007 retained_intron Homo_sapiens 0 427
ENST00000472831 DBN1-003 retained_intron Homo_sapiens 0 1823
ENST00000477391 DBN1-009 protein_coding Homo_sapiens 0 1240
ENST00000505550 DBN1-010 retained_intron Homo_sapiens 0 324
ENST00000506117 DBN1-011 protein_coding Homo_sapiens 0 435
ENST00000512501 DBN1-006 protein_coding Homo_sapiens 0 817
ENST00000514833 DBN1-008 protein_coding Homo_sapiens 0 501

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