C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SECIS binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040117 Secisbp2-001 ENSMUSG00000035139 10090 + 13:51651697-51684044 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040117
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040117 6.029±0.54 8.342±1.86 5.705±1.38 7.996±3.15 5.328±2.07 6.169±2.33 4.119±0.74 8.420±1.20 7.143±2.04 5.551±1.17 3.363±0.79 7.915±3.18 5.303±1.94 8.407±1.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UF CIL_0008UF_0002 VISTA 13:51620205-52221621
CIL_00069H CIL_00069H_0002 CGP 13:51645232-51684044

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001514 IMP selenocysteine incorporation
GO:0003730 IEA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0030529 IDA ribonucleoprotein complex
GO:0035368 IDA selenocysteine insertion sequence binding
GO:0043021 IDA ribonucleoprotein complex binding
GO:0044822 IEA poly(A) RNA binding
GO:2000623 IMP negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339901 SECISBP2-004 protein_coding Homo_sapiens 0 1411
ENST00000375807 SECISBP2-001 protein_coding Homo_sapiens 0 1633
ENST00000498819 SECISBP2-008 processed_transcript Homo_sapiens 0 311
ENST00000534113 SECISBP2-201 protein_coding Homo_sapiens 0 1594

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