C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trophoblast glycoprotein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035274 Tpbg 10090 + 9:85842380-85847040 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006559 Tpbg-002 85842380-85847040 protein_coding
  ENSMUST00000098500 Tpbg-001 85842865-85847040 protein_coding
  ENSMUST00000185559 Tpbg-003 85843361-85843925 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006559ENSMUST00000098500
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006559 1.265±0.43 0.309±0.00 1.120±0.06 1.115±0.55 1.308±0.35 0.456±0.02 0.127±0.00 0.274±0.11 0.019±0.02 0.719±0.00 0.054±0.00 1.328±0.96 0.426±0.00 0.239±0.03
ENSMUST00000098500 1.943±1.76 1.272±0.41 5.445±1.08 4.653±2.42 4.853±2.36 2.636±1.16 0.115±0.00 0.500±0.27 0.113±0.09 1.110±0.27 0.052±0.02 6.077±3.44 0.366±0.33 0.128±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GF CIL_0006GF_0002 CGP 9:85687360-85847040
CIL_0006GG CIL_0006GG_0002 CGP 9:85842380-86464950

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0009986 IEA cell surface
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037186 tpbgb trophoblast glycoprotein b protein_coding Danio_rerio
ENSG00000146242 TPBG trophoblast glycoprotein protein_coding Homo_sapiens

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