C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trophoblast glycoprotein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000146242 TPBG 9606 + 6:82363206-82370828 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369750 TPBG-001 82363631-82370828 protein_coding
  ENST00000535040 TPBG-201 82363206-82367417 protein_coding
  ENST00000543496 TPBG-202 82364244-82367417 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369750ENST00000535040ENST00000543496
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369750 0.355±0.00 N/A 0.064±0.00 0.356±0.18 0.260±0.22 0.059±0.00 0.366±0.00 0.696±0.00 0.271±0.00 N/A 0.149±0.01 N/A 0.111±0.00
ENST00000535040 N/A 0.448±0.00 0.208±0.00 N/A N/A N/A N/A N/A N/A N/A 0.949±0.36 4.503±3.27 1.264±0.69
ENST00000543496 3.961±0.00 2.764±0.00 1.171±0.13 2.203±0.62 2.766±2.24 1.336±0.00 2.787±2.48 1.752±1.48 3.794±0.00 0.587±0.29 1.917±0.85 8.408±5.28 2.433±1.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GF CIL_0006GF_0001 CGP 6:82169983-82370828
CIL_0006GG CIL_0006GG_0001 CGP 6:82363206-83065841

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005887 TAS integral component of plasma membrane
GO:0007155 NAS cell adhesion
GO:0009986 IDA cell surface

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037186 tpbgb trophoblast glycoprotein b protein_coding Danio_rerio
ENSMUSG00000035274 Tpbg trophoblast glycoprotein protein_coding Mus_musculus

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