C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: aristaless related homeobox
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035277 Arx 10090 + X:93286445-93298357 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000046565 Arx-001 93286529-93298357 protein_coding
  ENSMUST00000113947 Arx-002 93286522-93298357 protein_coding
  ENSMUST00000187010 Arx-003 93286445-93288382 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046565ENSMUST00000113947ENSMUST00000187010
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046565 0.013±0.00 0.247±0.01 12.144±10.43 N/A 0.202±0.00 N/A N/A 0.077±0.02 N/A 0.106±0.05 5.588±1.74 N/A 0.478±0.10
ENSMUST00000113947 0.015±0.01 0.243±0.04 7.353±4.26 0.034±0.01 0.205±0.07 0.011±0.00 0.034±0.00 0.020±0.01 0.027±0.00 0.060±0.03 9.188±2.28 0.012±0.00 0.366±0.16
ENSMUST00000187010 0.012±0.00 N/A 0.330±0.00 N/A N/A N/A 0.022±0.00 N/A N/A 0.026±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PA CIL_0007PA_0002 UCNEbase X:92514784-93497939
CIL_0009CI CIL_0009CI_0002 VISTA X:92999508-93601047
CIL_0008W6 CIL_0008W6_0002 VISTA X:93001146-93602798
CIL_0008W7 CIL_0008W7_0002 VISTA X:93009764-93611448
CIL_0008W8 CIL_0008W8_0002 VISTA X:93076664-93678616
CIL_0008NM CIL_0008NM_0002 VISTA X:93107742-93710584
CIL_0008NL CIL_0008NL_0002 VISTA X:93128674-93730367
CIL_0008NF CIL_0008NF_0002 VISTA X:93157367-93758875
CIL_0008NE CIL_0008NE_0002 VISTA X:93196691-93798662
CIL_00084H CIL_00084H_0002 VISTA X:93277817-93878339

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001206 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001764 IMP neuron migration
GO:0003682 IDA chromatin binding
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007411 IMP axon guidance
GO:0021759 IMP globus pallidus development
GO:0021772 IMP olfactory bulb development
GO:0021800 IMP cerebral cortex tangential migration
GO:0021831 IMP embryonic olfactory bulb interneuron precursor migration
GO:0021846 IMP cell proliferation in forebrain
GO:0021853 IMP cerebral cortex GABAergic interneuron migration
GO:0030900 IMP forebrain development
GO:0042127 IMP regulation of cell proliferation
GO:0044241 IMP lipid digestion
GO:0046622 IMP positive regulation of organ growth
GO:0072148 IMP epithelial cell fate commitment

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058011 arxa aristaless related homeobox a protein_coding Danio_rerio
ENSDARG00000075896 ARX (2 of 2) aristaless related homeobox protein_coding Danio_rerio
ENSG00000004848 ARX aristaless related homeobox protein_coding Homo_sapiens

Loading