C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aristaless related homeobox
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046565 Arx-001 ENSMUSG00000035277 10090 + X:93286529-93298357 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonLiverMuscleOvaryTestisENSMUST00000046565
Transcript ID Adipose Adrenal Brain Colon Liver Muscle Ovary Testis
ENSMUST00000046565 0.013±0.00 0.247±0.01 12.144±10.43 0.202±0.00 0.077±0.02 0.106±0.05 5.588±1.74 0.478±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PA CIL_0007PA_0002 UCNEbase X:92514784-93497939
CIL_0009CI CIL_0009CI_0002 VISTA X:92999508-93601047
CIL_0008W6 CIL_0008W6_0002 VISTA X:93001146-93602798
CIL_0008W7 CIL_0008W7_0002 VISTA X:93009764-93611448
CIL_0008W8 CIL_0008W8_0002 VISTA X:93076664-93678616
CIL_0008NM CIL_0008NM_0002 VISTA X:93107742-93710584
CIL_0008NL CIL_0008NL_0002 VISTA X:93128674-93730367
CIL_0008NF CIL_0008NF_0002 VISTA X:93157367-93758875
CIL_0008NE CIL_0008NE_0002 VISTA X:93196691-93798662
CIL_00084H CIL_00084H_0002 VISTA X:93277817-93878339

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001206 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001764 IMP neuron migration
GO:0003682 IDA chromatin binding
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007411 IMP axon guidance
GO:0021759 IMP globus pallidus development
GO:0021772 IMP olfactory bulb development
GO:0021800 IMP cerebral cortex tangential migration
GO:0021831 IMP embryonic olfactory bulb interneuron precursor migration
GO:0021846 IMP cell proliferation in forebrain
GO:0021853 IMP cerebral cortex GABAergic interneuron migration
GO:0030900 IMP forebrain development
GO:0042127 IMP regulation of cell proliferation
GO:0044241 IMP lipid digestion
GO:0046622 IMP positive regulation of organ growth
GO:0072148 IMP epithelial cell fate commitment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000003310 sox21b-001 protein_coding Danio_rerio 0.000002 58
ENST00000379044 ARX-001 protein_coding Homo_sapiens 0 2573

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