C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0009CI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs145 VISTA 9606 X:24700754-25302415
GeneTranscriptPositionBiotype
ENSG00000004848 (ARX)
aristaless related homeobox 		ENST00000379044 (ARX-001) 25003694-25015948 protein_coding
ENSG00000101868 (POLA1)
polymerase (DNA directed), alpha 1, catalytic subunit 		ENST00000379059 (POLA1-001) 24693947-24996986 protein_coding
ENST00000379068 (POLA1-005) 24693919-24996986 protein_coding
ENST00000480125 (POLA1-002) 24745503-24810781 processed_transcript
ENST00000493342 (POLA1-003) 24726933-24734353 processed_transcript
ENST00000494204 (POLA1-004) 24812830-24841983 processed_transcript
ENST00000611764 (POLA1-201) 24693947-24996983 protein_coding
ENSG00000176812 (RP11-629O4.1)
 ENST00000433306 (RP11-629O4.1-001) 25194381-25195207 processed_pseudogene
ENSG00000214111 (RP1-258N20.3)
 ENST00000438281 (RP1-258N20.3-001) 25029545-25030235 processed_pseudogene
ENSG00000232472 (EEF1B2P3)
eukaryotic translation elongation factor 1 beta 2 pseudogene 3 		ENST00000447718 (EEF1B2P3-001) 24788392-24789069 processed_pseudogene
ENSG00000240439 (RN7SL91P)
RNA, 7SL, cytoplasmic 91, pseudogene 		ENST00000469313 (RN7SL91P-201) 25060649-25060939 misc_RNA
CIL_0009CI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs145 VISTA 10090 X:92999508-93601047
GeneTranscriptPositionBiotype
ENSMUSG00000006678 (Pola1)
polymerase (DNA directed), alpha 1 		ENSMUST00000006856 (Pola1-001) 93304767-93632155 protein_coding
ENSMUST00000124236 (Pola1-002) 93623298-93632115 processed_transcript
ENSMUST00000127718 (Pola1-003) 93623076-93632143 retained_intron
ENSMUST00000142479 (Pola1-004) 93480490-93490946 processed_transcript
ENSMUSG00000035277 (Arx)
aristaless related homeobox 		ENSMUST00000046565 (Arx-001) 93286529-93298357 protein_coding
ENSMUST00000113947 (Arx-002) 93286522-93298357 protein_coding
ENSMUST00000187010 (Arx-003) 93286445-93288382 retained_intron
ENSMUSG00000083207 (Gm14780)
predicted gene 14780 		ENSMUST00000118387 (Gm14780-001) 93527573-93530309 processed_pseudogene
ENSMUSG00000088445 (Gm23557)
predicted gene, 23557 		ENSMUST00000157820 (Gm23557-201) 93573731-93573868 snoRNA
ENSMUSG00000095110 (1700003E24Rik)
RIKEN cDNA 1700003E24 gene 		ENSMUST00000088134 (1700003E24Rik-001) 93156154-93156873 protein_coding
ENSMUSG00000096153 (BC061195)
cDNA sequence BC061195 		ENSMUST00000088133 (BC061195-001) 93183227-93183946 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009CI_0001ENSG00000004848ENST00000379044ENSG00000101868ENST00000379059ENST00000379068ENST00000480125ENST00000493342ENST00000494204ENST00000611764ENSG00000176812ENST00000433306ENSG00000214111ENST00000438281ENSG00000232472ENST00000447718ENSG00000240439ENST00000469313CIL_0009CI_0002ENSMUSG00000006678ENSMUST00000006856ENSMUST00000124236ENSMUST00000127718ENSMUST00000142479ENSMUSG00000035277ENSMUST00000046565ENSMUST00000113947ENSMUST00000187010ENSMUSG00000083207ENSMUST00000118387ENSMUSG00000088445ENSMUST00000157820ENSMUSG00000095110ENSMUST00000088134ENSMUSG00000096153ENSMUST00000088133
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009CI_0001ENSG00000004848ENST00000379044ENSG00000101868ENST00000379059ENST00000379068ENST00000494204ENST00000611764ENSG00000176812ENST00000433306ENSG00000214111ENST00000438281ENSG00000232472ENST00000447718ENSG00000240439ENST00000469313CIL_0009CI_0002ENSMUSG00000006678ENSMUST00000006856ENSMUST00000124236ENSMUST00000127718ENSMUSG00000035277ENSMUST00000046565ENSMUST00000113947ENSMUST00000187010ENSMUSG00000083207ENSMUST00000118387ENSMUSG00000088445ENSMUST00000157820ENSMUSG00000095110ENSMUST00000088134ENSMUSG00000096153ENSMUST00000088133
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000004848 ENST00000379044 0.018±0.00 0.092±0.00 N/A 2.037±0.74 0.394±0.00 0.072±0.05 N/A 0.087±0.00 N/A 0.496±0.46 2.377±1.68 23.275±25.60 0.217±0.01 8.552±4.98
ENSG00000101868 ENST00000379059 1.853±0.00 0.894±0.00 N/A 0.909±0.00 1.600±0.00 1.330±0.05 N/A 1.696±0.00 0.149±0.00 N/A N/A 0.906±0.00 0.534±0.18 3.328±0.00
ENST00000379068 N/A 0.692±0.00 0.447±0.00 0.159±0.00 N/A 1.002±0.25 0.811±0.63 N/A 0.786±0.00 1.386±0.21 1.284±0.00 2.760±1.26 1.884±0.22 1.603±0.00
ENST00000480125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.700±0.00 N/A N/A N/A
ENST00000611764 N/A N/A N/A 0.456±0.00 N/A N/A N/A 0.321±0.00 0.242±0.00 N/A 0.499±0.00 0.398±0.00 N/A N/A
ENSG00000176812 ENST00000433306 0.020±0.00 0.022±0.00 N/A N/A N/A 0.084±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214111 ENST00000438281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 0.037±0.00 0.039±0.00
ENSG00000232472 ENST00000447718 0.081±0.00 0.283±0.00 N/A 0.088±0.00 1.224±0.00 0.268±0.00 N/A 0.159±0.04 0.059±0.00 0.085±0.00 0.115±0.00 0.675±0.53 0.156±0.08 0.048±0.00
ENSG00000240439 ENST00000469313 0.053±0.00 0.165±0.00 N/A N/A 0.112±0.00 0.255±0.00 N/A 0.385±0.00 N/A 0.156±0.00 0.049±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006678 ENSMUST00000006856 0.504±0.24 0.304±0.08 1.048±0.12 1.180±0.50 0.262±0.10 0.462±0.13 0.256±0.14 0.307±0.05 2.317±2.64 0.436±0.04 0.142±0.04 1.354±1.41 2.278±1.80 0.236±0.11
ENSMUST00000124236 N/A 0.586±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.209±0.00 0.547±0.08 N/A 0.322±0.00
ENSMUST00000127718 N/A N/A N/A N/A 0.081±0.00 N/A N/A 0.130±0.00 N/A N/A N/A 0.158±0.00 N/A N/A
ENSMUST00000142479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035277 ENSMUST00000046565 0.013±0.00 0.247±0.01 N/A 12.144±10.43 N/A 0.202±0.00 N/A N/A 0.077±0.02 N/A 0.106±0.05 5.588±1.74 N/A 0.478±0.10
ENSMUST00000113947 0.015±0.01 0.243±0.04 N/A 7.353±4.26 0.034±0.01 0.205±0.07 0.011±0.00 0.034±0.00 0.020±0.01 0.027±0.00 0.060±0.03 9.188±2.28 0.012±0.00 0.366±0.16
ENSMUST00000187010 0.012±0.00 N/A N/A 0.330±0.00 N/A N/A N/A 0.022±0.00 N/A N/A 0.026±0.00 N/A N/A N/A
ENSMUSG00000083207 ENSMUST00000118387 0.102±0.00 N/A 0.030±0.00 0.012±0.00 0.028±0.00 0.064±0.03 N/A 0.028±0.00 0.145±0.12 0.011±0.00 N/A 0.063±0.04 N/A N/A
ENSMUSG00000088445 ENSMUST00000157820 N/A N/A N/A N/A N/A N/A N/A N/A 4.177±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000095110 ENSMUST00000088134 N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A 0.019±0.00 N/A N/A 0.261±0.20 N/A 13.584±5.51
ENSMUSG00000096153 ENSMUST00000088133 N/A N/A N/A N/A N/A N/A N/A 0.087±0.00 0.019±0.00 N/A N/A 0.462±0.00 N/A 15.156±2.85

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