C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: remodeling and spacing factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035623 Rsf1 10090 + 7:97579896-97692782 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042399 Rsf1-201 97579896-97692782 protein_coding
  ENSMUST00000107153 Rsf1-001 97579897-97692778 protein_coding
  ENSMUST00000123731 Rsf1-003 97662552-97686608 processed_transcript
  ENSMUST00000127891 Rsf1-004 97579907-97639463 processed_transcript
  ENSMUST00000135270 Rsf1-005 97669847-97680778 processed_transcript
  ENSMUST00000150288 Rsf1-006 97669492-97676180 retained_intron
  ENSMUST00000156060 Rsf1-002 97579897-97686420 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000042399ENSMUST00000107153ENSMUST00000123731ENSMUST00000127891ENSMUST00000156060
Transcript ID Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000042399 N/A 1.396±0.00 N/A 0.354±0.05 0.652±0.00 N/A 0.486±0.03 1.307±0.38 N/A N/A
ENSMUST00000107153 1.503±0.48 2.440±0.73 0.423±0.00 0.450±0.04 0.658±0.00 1.293±0.30 0.666±0.25 4.097±1.27 1.199±0.37 0.681±0.07
ENSMUST00000123731 2.831±0.00 N/A N/A N/A N/A N/A 1.557±0.00 N/A 3.254±0.05 3.588±0.69
ENSMUST00000127891 N/A N/A N/A N/A N/A N/A N/A 9.602±0.00 N/A N/A
ENSMUST00000156060 N/A 10.524±0.00 N/A N/A N/A N/A N/A 17.739±0.00 4.932±3.18 17.523±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006334 IEA nucleosome assembly
GO:0006338 IEA chromatin remodeling
GO:0006352 IEA DNA-templated transcription, initiation
GO:0008270 IEA zinc ion binding
GO:0016584 IEA nucleosome positioning
GO:0031213 IEA RSF complex
GO:0042393 IEA histone binding
GO:0043392 IEA negative regulation of DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0050434 IEA positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068640 RSF1 (1 of 3) remodeling and spacing factor 1 protein_coding Danio_rerio
ENSDARG00000074737 RSF1 (2 of 3) remodeling and spacing factor 1 protein_coding Danio_rerio
ENSDARG00000093503 RSF1 (3 of 3) remodeling and spacing factor 1 protein_coding Danio_rerio
ENSG00000048649 RSF1 remodeling and spacing factor 1 protein_coding Homo_sapiens

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