C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: remodeling and spacing factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000048649 RSF1 9606 - 11:77659996-77821017 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000308488 RSF1-001 77659996-77821017 protein_coding
  ENST00000440064 RSF1-004 77725573-77820706 protein_coding
  ENST00000467567 RSF1-002 77762050-77820869 retained_intron
  ENST00000480887 RSF1-003 77666230-77703533 protein_coding
  ENST00000526324 RSF1-006 77683769-77725680 protein_coding
  ENST00000528095 RSF1-005 77701119-77820711 protein_coding
  ENST00000529470 RSF1-012 77675079-77677061 retained_intron
  ENST00000530604 RSF1-008 77813354-77820699 processed_transcript
  ENST00000531026 RSF1-007 77675095-77698528 protein_coding
  ENST00000531768 RSF1-011 77690966-77700761 retained_intron
  ENST00000532556 RSF1-010 77693593-77700998 protein_coding
  ENST00000534794 RSF1-009 77702401-77764690 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308488ENST00000480887ENST00000526324ENST00000528095ENST00000531026
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308488 2.600±0.00 1.339±0.00 N/A 1.536±0.54 1.992±0.00 1.397±0.00 1.670±0.00 1.595±0.00 N/A 0.945±0.00 N/A 2.527±1.19 1.286±0.26 3.264±0.40
ENST00000480887 1.568±0.00 N/A 1.367±0.00 N/A N/A 2.418±0.00 0.323±0.00 0.701±0.00 1.355±0.00 1.264±0.14 0.273±0.00 7.071±6.14 1.551±1.14 10.170±7.61
ENST00000526324 N/A N/A 1.420±0.00 3.382±0.41 2.314±0.00 2.894±0.00 1.502±0.87 1.522±0.00 2.613±0.00 2.411±0.31 0.305±0.00 2.570±0.00 10.098±0.00 N/A
ENST00000528095 N/A N/A 2.288±0.00 N/A 3.694±0.00 3.402±0.00 1.096±0.00 N/A 7.239±0.00 3.657±0.00 0.451±0.00 3.473±0.00 N/A N/A
ENST00000531026 N/A N/A N/A N/A N/A N/A N/A 3.506±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JG CIL_0001JG_0002 CGP 11:77659996-77918432

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006334 IDA nucleosome assembly
GO:0006338 IDA chromatin remodeling
GO:0006352 IDA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016584 IDA nucleosome positioning
GO:0031213 IEA:IPI RSF complex
GO:0034080 TAS CENP-A containing nucleosome assembly
GO:0042393 IDA histone binding
GO:0043392 IDA negative regulation of DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0050434 IDA positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068640 RSF1 (1 of 3) remodeling and spacing factor 1 protein_coding Danio_rerio
ENSDARG00000074737 RSF1 (2 of 3) remodeling and spacing factor 1 protein_coding Danio_rerio
ENSDARG00000093503 RSF1 (3 of 3) remodeling and spacing factor 1 protein_coding Danio_rerio
ENSMUSG00000035623 Rsf1 remodeling and spacing factor 1 protein_coding Mus_musculus

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