C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc fingers and homeoboxes 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035877 Zhx3 10090 - 2:160748708-160872998 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000103111 Zhx3-003 160765185-160872572 protein_coding
  ENSMUST00000103112 Zhx3-001 160765782-160859631 protein_coding
  ENSMUST00000109460 Zhx3-201 160770447-160872990 protein_coding
  ENSMUST00000127201 Zhx3-005 160781941-160872990 protein_coding
  ENSMUST00000133937 Zhx3-004 160748708-160872998 processed_transcript
  ENSMUST00000176141 Zhx3-008 160781904-160872829 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103111ENSMUST00000103112ENSMUST00000109460
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103111 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.712±0.01 N/A N/A N/A
ENSMUST00000103112 7.768±0.74 8.232±0.86 3.234±0.42 6.112±0.48 4.833±0.64 2.710±0.41 3.947±0.31 10.086±1.03 4.543±3.67 9.168±1.27 2.013±0.31 8.238±1.22 1.749±0.00 4.210±0.74
ENSMUST00000109460 N/A 7.044±0.99 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.455±3.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TO CIL_0008TO_0002 VISTA 2:160151305-160752587
CIL_0009AU CIL_0009AU_0002 VISTA 2:160192291-160794448
CIL_0007XA CIL_0007XA_0002 VISTA 2:160203620-160804635
CIL_0008MI CIL_0008MI_0002 VISTA 2:160213670-160814864
CIL_0008QO CIL_0008QO_0002 VISTA 2:160215694-160817266
CIL_0009AV CIL_0009AV_0002 VISTA 2:160278530-160880585
CIL_0004EC CIL_0004EC_0002 CGP 2:160645888-160775760
CIL_0002I4 CIL_0002I4_0002 CGP 2:160731300-160872998
CIL_0004E6 CIL_0004E6_0002 CGP 2:160748708-160906002

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0003714 IEA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005938 ISO cell cortex
GO:0006351 IEA transcription, DNA-templated
GO:0030154 IEA cell differentiation
GO:0042803 ISS protein homodimerization activity
GO:0045669 ISS positive regulation of osteoblast differentiation
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046982 ISS protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019774 zhx3 zinc fingers and homeoboxes 3 protein_coding Danio_rerio
ENSG00000174306 ZHX3 zinc fingers and homeoboxes 3 protein_coding Homo_sapiens

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