C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Bardet-Biedl syndrome 9 (human)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035919 Bbs9 10090 + 9:22475715-22888280 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039798 Bbs9-001 22475715-22888280 protein_coding
  ENSMUST00000124076 Bbs9-012 22678750-22888274 retained_intron
  ENSMUST00000127296 Bbs9-005 22643841-22888280 nonsense_mediated_decay
  ENSMUST00000128812 Bbs9-008 22475867-22514093 protein_coding
  ENSMUST00000130479 Bbs9-006 22658280-22680513 retained_intron
  ENSMUST00000136084 Bbs9-011 22635665-22888280 protein_coding
  ENSMUST00000137547 Bbs9-010 22574409-22628984 processed_transcript
  ENSMUST00000142313 Bbs9-007 22475731-22514047 protein_coding
  ENSMUST00000147405 Bbs9-004 22490829-22888280 protein_coding
  ENSMUST00000147712 Bbs9-002 22475731-22888274 protein_coding
  ENSMUST00000150395 Bbs9-003 22475722-22888274 protein_coding
  ENSMUST00000152719 Bbs9-009 22512457-22579509 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039798ENSMUST00000124076ENSMUST00000127296ENSMUST00000147405ENSMUST00000147712ENSMUST00000150395ENSMUST00000152719
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039798 1.311±0.61 1.365±0.34 2.432±0.43 1.695±0.78 1.790±0.71 0.807±0.15 0.726±0.16 1.758±0.53 0.758±0.22 4.044±0.68 0.931±0.48 2.375±0.57 1.589±0.49 7.286±1.92
ENSMUST00000124076 3.470±0.55 3.853±1.50 N/A 2.681±0.00 4.550±1.03 2.697±0.73 1.101±0.00 4.083±1.18 1.258±0.45 5.168±1.89 N/A 10.512±3.57 N/A 18.844±4.57
ENSMUST00000127296 1.557±0.00 N/A 1.183±0.00 1.675±0.00 2.349±1.00 1.175±0.30 1.601±0.00 N/A 0.589±0.10 2.213±0.00 0.686±0.17 2.882±0.55 1.377±0.32 13.811±0.00
ENSMUST00000147405 N/A N/A N/A 3.109±1.88 N/A N/A N/A N/A N/A N/A 0.408±0.06 N/A 0.361±0.00 N/A
ENSMUST00000147712 0.790±0.02 N/A 1.577±0.36 1.128±0.51 N/A 0.863±0.00 0.724±0.31 1.364±0.44 0.474±0.10 1.441±0.58 0.343±0.06 2.227±1.54 0.506±0.14 N/A
ENSMUST00000150395 0.716±0.00 0.438±0.09 1.155±0.04 0.536±0.00 1.526±0.75 1.676±0.00 0.537±0.24 1.222±0.29 0.369±0.19 1.175±0.10 0.577±0.14 1.442±0.28 0.302±0.00 4.504±1.57
ENSMUST00000152719 N/A N/A N/A 2.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.143±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003FH CIL_0003FH_0002 CGP 9:22475715-23485202

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000242 IEA pericentriolar material
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005929 ISS cilium
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0034464 IDA BBSome
GO:0036064 ISO ciliary basal body
GO:0042384 IMP cilium assembly
GO:0045444 IEP fat cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079217 bbs9 Bardet-Biedl syndrome 9 protein_coding Danio_rerio
ENSG00000122507 BBS9 Bardet-Biedl syndrome 9 protein_coding Homo_sapiens

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