C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Bardet-Biedl syndrome 9 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147712 Bbs9-002 ENSMUSG00000035919 10090 + 9:22475731-22888274 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000147712
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000147712 0.790±0.02 1.577±0.36 1.128±0.51 0.863±0.00 0.724±0.31 1.364±0.44 0.474±0.10 1.441±0.58 0.343±0.06 2.227±1.54 0.506±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003FH CIL_0003FH_0002 CGP 9:22475715-23485202

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000242 IEA pericentriolar material
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005929 ISS cilium
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0034464 IDA BBSome
GO:0036064 ISO ciliary basal body
GO:0042384 IMP cilium assembly
GO:0045444 IEP fat cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000242067 BBS9-004 protein_coding Homo_sapiens 0 2547
ENST00000350941 BBS9-001 protein_coding Homo_sapiens 0 1411
ENST00000355070 BBS9-005 protein_coding Homo_sapiens 0 2610
ENST00000396127 BBS9-003 protein_coding Homo_sapiens 0 1411
ENST00000425508 BBS9-201 protein_coding Homo_sapiens 0 966
ENST00000433714 BBS9-002 nonsense_mediated_decay Homo_sapiens 0 1345
ENST00000434373 BBS9-006 protein_coding Homo_sapiens 0 1190
ENST00000442858 BBS9-010 protein_coding Homo_sapiens 0 551
ENST00000496029 BBS9-011 processed_transcript Homo_sapiens 0 257

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