C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Bardet-Biedl syndrome 9 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039798 Bbs9-001 ENSMUSG00000035919 10090 + 9:22475715-22888280 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039798
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039798 1.311±0.61 1.365±0.34 2.432±0.43 1.695±0.78 1.790±0.71 0.807±0.15 0.726±0.16 1.758±0.53 0.758±0.22 4.044±0.68 0.931±0.48 2.375±0.57 1.589±0.49 7.286±1.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003FH CIL_0003FH_0002 CGP 9:22475715-23485202

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005929 ISS cilium
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0034464 IDA BBSome
GO:0036064 ISO ciliary basal body
GO:0042384 IMP cilium assembly
GO:0045444 IEP fat cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000242067 BBS9-004 protein_coding Homo_sapiens 0 2521
ENST00000350941 BBS9-001 protein_coding Homo_sapiens 0 1386
ENST00000355070 BBS9-005 protein_coding Homo_sapiens 0 2586
ENST00000396127 BBS9-003 protein_coding Homo_sapiens 0 1386
ENST00000425508 BBS9-201 protein_coding Homo_sapiens 0 966
ENST00000433714 BBS9-002 nonsense_mediated_decay Homo_sapiens 0 1321
ENST00000434373 BBS9-006 protein_coding Homo_sapiens 0 1190
ENST00000442858 BBS9-010 protein_coding Homo_sapiens 0 551
ENST00000496029 BBS9-011 processed_transcript Homo_sapiens 0 257

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