C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Pbx/knotted 1 homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039674 Pknox2-001 ENSMUSG00000035934 10090 - 9:36890982-37147289 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039674
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039674 4.800±4.14 0.323±0.15 3.619±0.09 8.435±3.78 1.658±1.54 0.882±0.29 2.311±0.33 1.587±0.44 0.105±0.04 7.208±3.01 8.584±1.19 9.349±3.48 0.696±0.29 15.022±9.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080D CIL_00080D_0002 VISTA 9:36753339-37355278
CIL_0003CK CIL_0003CK_0002 CGP 9:36890982-37223210

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISA DNA binding
GO:0003785 IDA actin monomer binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006357 IGI regulation of transcription from RNA polymerase II promoter
GO:0015629 IDA actin cytoskeleton
GO:0015630 IDA microtubule cytoskeleton
GO:0043565 IDA sequence-specific DNA binding
GO:0051015 IDA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298282 PKNOX2-001 protein_coding Homo_sapiens 0 2808
ENST00000526955 PKNOX2-006 retained_intron Homo_sapiens 0 1319
ENST00000527238 PKNOX2-007 protein_coding Homo_sapiens 0 217
ENST00000530517 PKNOX2-002 processed_transcript Homo_sapiens 0 2132
ENST00000531116 PKNOX2-004 processed_transcript Homo_sapiens 0 2189
ENST00000531212 PKNOX2-008 protein_coding Homo_sapiens 0 303
ENST00000532623 PKNOX2-003 nonsense_mediated_decay Homo_sapiens 0 1999
ENST00000557814 PKNOX2-015 processed_transcript Homo_sapiens 0 375
ENST00000558705 PKNOX2-012 protein_coding Homo_sapiens 0 545
ENST00000558729 PKNOX2-009 processed_transcript Homo_sapiens 0 425
ENST00000559662 PKNOX2-014 processed_transcript Homo_sapiens 0 532
ENST00000561298 PKNOX2-013 retained_intron Homo_sapiens 0 436
ENST00000561399 PKNOX2-011 processed_transcript Homo_sapiens 0.00000000000004 82

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