C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SURP and G patch domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036054 Sugp2 10090 + 8:70234226-70279915 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000093458 Sugp2-001 70234233-70263105 protein_coding
  ENSMUST00000126239 Sugp2-005 70257202-70264296 protein_coding
  ENSMUST00000129402 Sugp2-006 70273592-70279914 processed_transcript
  ENSMUST00000130492 Sugp2-011 70257476-70259403 retained_intron
  ENSMUST00000131489 Sugp2-002 70234226-70263105 nonsense_mediated_decay
  ENSMUST00000133924 Sugp2-012 70259752-70263105 processed_transcript
  ENSMUST00000135640 Sugp2-010 70248144-70251868 retained_intron
  ENSMUST00000136391 Sugp2-013 70260442-70263105 retained_intron
  ENSMUST00000136758 Sugp2-003 70234623-70254763 retained_intron
  ENSMUST00000145078 Sugp2-009 70234617-70242651 protein_coding
  ENSMUST00000148378 Sugp2-007 70252064-70279915 processed_transcript
  ENSMUST00000155771 Sugp2-008 70236388-70242903 protein_coding
  ENSMUST00000156330 Sugp2-004 70243584-70258270 retained_intron
  ENSMUST00000164403 Sugp2-201 70234226-70261042 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000093458ENSMUST00000126239ENSMUST00000131489
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000093458 N/A N/A N/A 13.597±2.47 N/A N/A 2.954±0.41 N/A N/A N/A 8.231±0.71 6.206±0.00 3.070±0.99 65.934±17.20
ENSMUST00000126239 2.991±0.00 N/A 4.520±0.00 11.214±0.83 3.314±0.43 2.321±0.19 1.917±0.52 1.246±0.19 1.729±0.49 2.344±0.08 N/A 4.019±1.19 N/A N/A
ENSMUST00000131489 10.510±1.11 10.749±1.56 12.953±2.69 24.111±5.74 9.186±1.23 6.559±0.52 2.867±0.17 3.720±0.47 4.550±2.09 7.803±0.84 N/A 12.028±3.03 5.004±1.93 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006BC CIL_0006BC_0002 CGP 8:70184340-70234466

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000064607 SUGP2 SURP and G patch domain containing 2 protein_coding Homo_sapiens

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