C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger, RAN-binding domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112538 Zranb3-005 ENSMUSG00000036086 10090 - 1:127954670-128103001 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLungMuscleOvaryTestisENSMUST00000112538
Transcript ID Brain Colon Heart Lung Muscle Ovary Testis
ENSMUST00000112538 0.467±0.00 0.319±0.00 0.067±0.00 0.056±0.00 0.272±0.04 1.088±0.00 0.440±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VP CIL_0006VP_0002 CGP 1:127868773-128103047
CIL_0003S4 CIL_0003S4_0003 CGP 1:127954184-128237736

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000733 IEA DNA strand renaturation
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0003677 IEA DNA binding
GO:0004520 ISS endodeoxyribonuclease activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0006281 ISS DNA repair
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0008270 IEA zinc ion binding
GO:0009411 ISS response to UV
GO:0031297 ISS replication fork processing
GO:0036292 ISS DNA rewinding
GO:0036310 ISS annealing helicase activity
GO:0043596 ISS nuclear replication fork
GO:0045910 ISS negative regulation of DNA recombination
GO:0048478 ISS replication fork protection
GO:0070530 ISS K63-linked polyubiquitin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264159 ZRANB3-001 protein_coding Homo_sapiens 0 2566
ENST00000401392 ZRANB3-002 protein_coding Homo_sapiens 0 2555
ENST00000403017 ZRANB3-003 nonsense_mediated_decay Homo_sapiens 0 1290
ENST00000452187 ZRANB3-004 processed_transcript Homo_sapiens 2e-20 104
ENST00000492193 ZRANB3-005 retained_intron Homo_sapiens 0 331
ENST00000536680 ZRANB3-201 protein_coding Homo_sapiens 0 1301

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