C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: acetyl-Coenzyme A acyltransferase 1A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036138 Acaa1a 10090 + 9:119339676-119350299 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039784 Acaa1a-001 119341294-119350299 protein_coding
  ENSMUST00000175719 Acaa1a-009 119348505-119349036 retained_intron
  ENSMUST00000175743 Acaa1a-003 119341515-119350033 protein_coding
  ENSMUST00000175859 Acaa1a-010 119341457-119344708 retained_intron
  ENSMUST00000176007 Acaa1a-008 119346098-119348755 retained_intron
  ENSMUST00000176351 Acaa1a-005 119339676-119342752 protein_coding
  ENSMUST00000176397 Acaa1a-004 119341515-119350033 protein_coding
  ENSMUST00000176546 Acaa1a-007 119342773-119349526 nonsense_mediated_decay
  ENSMUST00000176796 Acaa1a-002 119341414-119350298 retained_intron
  ENSMUST00000177463 Acaa1a-006 119341047-119347783 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039784ENSMUST00000175743ENSMUST00000175859ENSMUST00000176351ENSMUST00000176397ENSMUST00000176796ENSMUST00000177463
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039784 38.518±9.14 22.048±1.75 41.505±4.96 19.327±8.58 30.959±7.09 39.158±2.89 22.276±3.21 57.866±9.91 38.626±16.52 37.439±5.87 11.658±2.39 34.758±9.75 43.572±19.40 2.748±0.41
ENSMUST00000175743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.424±0.00 N/A N/A N/A
ENSMUST00000175859 N/A 99.007±17.67 N/A N/A N/A N/A N/A N/A N/A N/A N/A 54.898±13.36 N/A N/A
ENSMUST00000176351 N/A N/A N/A N/A N/A 44.525±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176397 N/A N/A N/A 12.802±0.00 N/A N/A N/A N/A N/A N/A N/A 54.181±0.00 56.309±20.50 N/A
ENSMUST00000176796 13.663±1.51 19.539±3.86 16.382±3.46 8.611±4.26 13.964±2.48 14.613±1.81 4.788±0.27 9.490±1.14 7.099±4.02 16.248±0.12 2.596±0.38 14.221±3.27 6.574±1.18 1.434±0.01
ENSMUST00000177463 51.636±6.02 174.021±74.13 N/A N/A 93.825±44.95 89.460±15.37 15.855±0.80 56.383±18.72 60.978±19.20 66.795±21.81 N/A 103.852±25.18 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BE CIL_0008BE_0002 VISTA 9:119196374-119798584
CIL_000131 CIL_000131_0002 CGP 9:119238432-119341411

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003985 TAS acetyl-CoA C-acetyltransferase activity
GO:0005739 IDA mitochondrion
GO:0005777 TAS peroxisome
GO:0006631 TAS:IEA fatty acid metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004687 acaa1 acetyl-Coenzyme A acyltransferase 1 protein_coding Danio_rerio
ENSG00000060971 ACAA1 acetyl-CoA acyltransferase 1 protein_coding Homo_sapiens

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