C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 260
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036339 Tmem260 10090 + 14:48446128-48515135 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000111735 Tmem260-001 48446382-48515135 protein_coding
  ENSMUST00000124720 Tmem260-005 48446128-48512790 protein_coding
  ENSMUST00000133744 Tmem260-002 48446352-48501512 retained_intron
  ENSMUST00000153765 Tmem260-004 48446393-48512135 nonsense_mediated_decay
  ENSMUST00000156480 Tmem260-003 48446398-48508372 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111735ENSMUST00000124720ENSMUST00000133744ENSMUST00000153765
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111735 5.533±1.42 10.983±1.75 2.612±1.96 2.856±1.34 5.654±1.95 5.440±2.04 1.644±0.08 6.510±1.49 2.960±1.00 7.445±1.43 0.490±0.14 8.452±2.61 1.971±1.22 1.501±0.35
ENSMUST00000124720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.610±0.00 0.764±0.14 0.737±0.46
ENSMUST00000133744 2.330±0.00 10.883±4.14 N/A N/A 2.479±1.21 3.795±1.49 N/A N/A 1.952±0.49 3.652±0.00 N/A 7.557±2.61 N/A N/A
ENSMUST00000153765 N/A 11.666±3.52 N/A N/A 5.648±0.00 3.676±1.20 N/A N/A 1.442±0.11 N/A N/A 6.378±0.60 0.744±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000601 CIL_000601_0003 CGP 14:48120869-48515135
CIL_0007P7 CIL_0007P7_0002 UCNEbase 14:48393330-49089945
CIL_00083W CIL_00083W_0002 VISTA 14:48407510-49011185
CIL_000602 CIL_000602_0003 CGP 14:48446128-48667644

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076362 tmem260 transmembrane protein 260 protein_coding Danio_rerio
ENSG00000070269 TMEM260 transmembrane protein 260 protein_coding Homo_sapiens

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