C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000601_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000029045-ENSDARG00000076362 CGP 7955 17:44077249-44238501
GeneTranscriptPositionBiotype
ENSDARG00000029045 (peli2)
pellino homolog 2 (Drosophila) 		ENSDART00000049503 (peli2-001) 44077249-44127290 protein_coding
ENSDARG00000076362 (tmem260)
transmembrane protein 260 		ENSDART00000113427 (tmem260-201) 44162527-44238500 protein_coding
ENSDART00000154660 (tmem260-001) 44162041-44238501 protein_coding
ENSDARG00000081051 (BX511267.1)
 ENSDART00000115620 (BX511267.1-201) 44084271-44084358 miRNA

Danio rerio Ensembl (Zv9)

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CIL_000601_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139946-ENSG00000070269 CGP 9606 14:56117814-56650606
GeneTranscriptPositionBiotype
ENSG00000070269 (TMEM260)
transmembrane protein 260 		ENST00000261556 (TMEM260-001) 56579793-56649515 protein_coding
ENST00000538838 (TMEM260-201) 56579884-56634953 protein_coding
ENST00000539559 (TMEM260-006) 56579841-56648094 nonsense_mediated_decay
ENST00000553335 (TMEM260-014) 56609245-56619466 processed_transcript
ENST00000554981 (TMEM260-011) 56585694-56603941 retained_intron
ENST00000555046 (TMEM260-015) 56636516-56650606 protein_coding
ENST00000555497 (TMEM260-004) 56579826-56647852 nonsense_mediated_decay
ENST00000555905 (TMEM260-013) 56609141-56633171 nonsense_mediated_decay
ENST00000556079 (TMEM260-010) 56585693-56609189 retained_intron
ENST00000556422 (TMEM260-002) 56579620-56649515 nonsense_mediated_decay
ENST00000556648 (TMEM260-007) 56615451-56647922 retained_intron
ENST00000556810 (TMEM260-008) 56488354-56585902 protein_coding
ENST00000556929 (TMEM260-012) 56585855-56618663 nonsense_mediated_decay
ENST00000556975 (TMEM260-009) 56579826-56593224 processed_transcript
ENST00000557626 (TMEM260-005) 56579831-56616264 retained_intron
ENST00000557657 (TMEM260-003) 56579825-56613910 retained_intron
ENSG00000139946 (PELI2)
pellino E3 ubiquitin protein ligase family member 2 		ENST00000267460 (PELI2-001) 56118375-56301526 protein_coding
ENST00000559044 (PELI2-002) 56117814-56290344 protein_coding
ENST00000561019 (PELI2-003) 56119109-56290293 protein_coding
ENSG00000258803 (RP11-624J12.1)
 ENST00000557246 (RP11-624J12.1-001) 56514331-56551309 lincRNA
ENSG00000259133 (RP11-1085N6.3)
 ENST00000554597 (RP11-1085N6.3-002) 56648965-56730506 antisense
ENST00000556696 (RP11-1085N6.3-001) 56723137-56730535 antisense
ENSG00000259483 (RP11-930O11.2)
 ENST00000560296 (RP11-930O11.2-001) 56303490-56310761 lincRNA
ENSG00000259719 (RP11-930O11.1)
 ENST00000558120 (RP11-930O11.1-001) 56310880-56326208 lincRNA
ENST00000560924 (RP11-930O11.1-002) 56310936-56345001 lincRNA
ENSG00000275569 (RP11-930O11.3)
 ENST00000612106 (RP11-930O11.3-001) 56305838-56306394 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_000601_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021846-ENSMUSG00000036339 CGP 10090 14:48120869-48515135
GeneTranscriptPositionBiotype
ENSMUSG00000021846 (Peli2)
pellino 2 		ENSMUST00000073150 (Peli2-201) 48120869-48260883 protein_coding
ENSMUSG00000036339 (Tmem260)
transmembrane protein 260 		ENSMUST00000111735 (Tmem260-001) 48446382-48515135 protein_coding
ENSMUST00000124720 (Tmem260-005) 48446128-48512790 protein_coding
ENSMUST00000133744 (Tmem260-002) 48446352-48501512 retained_intron
ENSMUST00000153765 (Tmem260-004) 48446393-48512135 nonsense_mediated_decay
ENSMUST00000156480 (Tmem260-003) 48446398-48508372 retained_intron
ENSMUSG00000063885 (Gm6498)
predicted gene 6498 		ENSMUST00000081029 (Gm6498-001) 48198716-48228413 processed_transcript
ENSMUST00000181413 (Gm6498-002) 48227201-48228206 transcribed_processed_pseudogene
ENSMUSG00000098192 (Gm3534)
predicted pseudogene 3534 		ENSMUST00000182522 (Gm3534-001) 48408618-48409618 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000601_0001ENSDARG00000029045ENSDART00000049503ENSDARG00000076362ENSDART00000113427ENSDART00000154660ENSDARG00000081051ENSDART00000115620CIL_000601_0002ENSG00000070269ENST00000261556ENST00000538838ENST00000539559ENST00000553335ENST00000554981ENST00000555046ENST00000555497ENST00000555905ENST00000556079ENST00000556422ENST00000556648ENST00000556810ENST00000556929ENST00000556975ENST00000557626ENST00000557657ENSG00000139946ENST00000267460ENST00000559044ENST00000561019ENSG00000258803ENST00000557246ENSG00000259133ENST00000554597ENST00000556696ENSG00000259483ENST00000560296ENSG00000259719ENST00000558120ENST00000560924ENSG00000275569ENST00000612106CIL_000601_0003ENSMUSG00000021846ENSMUST00000073150ENSMUSG00000036339ENSMUST00000111735ENSMUST00000124720ENSMUST00000133744ENSMUST00000153765ENSMUST00000156480ENSMUSG00000063885ENSMUST00000081029ENSMUST00000181413ENSMUSG00000098192ENSMUST00000182522
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000601_0001ENSDARG00000029045ENSDART00000049503ENSDARG00000076362ENSDART00000113427ENSDART00000154660ENSDARG00000081051ENSDART00000115620CIL_000601_0002ENSG00000070269ENST00000261556ENST00000539559ENST00000553335ENST00000555497ENST00000556079ENST00000556422ENST00000556648ENST00000556975ENST00000557657ENSG00000139946ENST00000267460ENST00000561019ENSG00000258803ENST00000557246ENSG00000259133ENST00000554597ENSG00000259483ENST00000560296ENSG00000259719ENST00000558120ENST00000560924ENSG00000275569ENST00000612106CIL_000601_0003ENSMUSG00000021846ENSMUST00000073150ENSMUSG00000036339ENSMUST00000111735ENSMUST00000124720ENSMUST00000133744ENSMUST00000153765ENSMUSG00000063885ENSMUST00000081029ENSMUST00000181413ENSMUSG00000098192ENSMUST00000182522
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000029045 ENSDART00000049503 N/A N/A N/A 1.613±0.60 N/A N/A 6.296±2.83 8.521±5.64 0.635±0.00 N/A N/A N/A N/A N/A
ENSDARG00000076362 ENSDART00000113427 N/A N/A N/A 3.132±0.98 N/A N/A 0.911±0.03 1.054±0.25 N/A N/A N/A N/A N/A N/A
ENSDART00000154660 N/A N/A N/A 1.531±0.72 N/A N/A 0.696±0.04 N/A 0.095±0.00 N/A 0.211±0.00 N/A N/A N/A
ENSDARG00000081051 ENSDART00000115620 N/A N/A N/A 296.194±0.00 N/A N/A 6.396±0.00 848.223±0.00 2.833±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000070269 ENST00000261556 0.660±0.00 0.810±0.00 N/A 1.040±0.00 1.016±0.00 N/A N/A 1.477±0.00 0.250±0.00 0.831±0.12 N/A 2.347±0.50 2.052±0.00 1.224±0.29
ENST00000538838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539559 N/A N/A 0.814±0.00 N/A 2.236±0.00 1.008±0.00 N/A 0.284±0.00 0.811±0.00 2.110±0.00 N/A 2.627±0.00 N/A N/A
ENST00000553335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.590±0.00 4.999±0.00
ENST00000554981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555497 N/A N/A N/A N/A N/A N/A N/A N/A 0.844±0.00 N/A N/A N/A N/A N/A
ENST00000555905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.673±0.00 N/A N/A N/A
ENST00000556422 N/A N/A N/A 0.722±0.00 N/A N/A N/A N/A N/A 0.498±0.00 0.155±0.00 N/A 0.410±0.08 N/A
ENST00000556648 N/A N/A N/A N/A N/A N/A 0.237±0.00 N/A N/A 1.664±0.00 N/A N/A N/A N/A
ENST00000556810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.235±0.00 N/A N/A N/A
ENST00000557626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557657 N/A N/A 0.555±0.00 N/A N/A N/A 0.172±0.00 N/A N/A N/A 0.140±0.00 N/A N/A N/A
ENSG00000139946 ENST00000267460 N/A 1.816±0.00 1.782±0.00 0.866±0.53 1.904±0.33 1.626±0.78 0.415±0.10 0.453±0.05 0.668±0.43 2.248±0.36 0.869±0.31 1.554±0.84 N/A 4.391±0.42
ENST00000559044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561019 N/A N/A N/A 2.603±0.00 6.172±0.00 5.047±0.00 1.225±0.00 1.113±0.00 N/A N/A 5.363±0.00 N/A N/A N/A
ENSG00000258803 ENST00000557246 0.046±0.00 0.017±0.00 N/A 0.056±0.00 N/A N/A N/A N/A 0.133±0.00 N/A N/A 0.018±0.00 N/A 0.027±0.00
ENSG00000259133 ENST00000554597 N/A N/A N/A N/A N/A 5.825±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259483 ENST00000560296 0.140±0.00 0.164±0.00 N/A 0.140±0.00 N/A 0.524±0.00 N/A 0.160±0.00 N/A N/A N/A N/A N/A 0.146±0.00
ENSG00000259719 ENST00000558120 N/A 0.028±0.00 N/A N/A 0.466±0.44 0.547±0.00 N/A N/A N/A N/A N/A 0.291±0.16 N/A N/A
ENST00000560924 N/A N/A N/A 0.183±0.16 N/A N/A 0.072±0.00 N/A N/A N/A N/A 0.242±0.22 N/A 0.145±0.02
ENSG00000275569 ENST00000612106 N/A 0.144±0.00 N/A 0.174±0.00 0.122±0.00 0.212±0.00 0.043±0.00 N/A 0.550±0.00 0.122±0.00 N/A 0.195±0.10 0.081±0.00 0.406±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021846 ENSMUST00000073150 9.588±0.56 5.463±2.21 10.844±1.61 3.229±1.27 5.367±0.54 6.496±0.99 2.360±0.29 11.176±1.04 2.851±1.97 7.861±1.22 1.783±0.17 13.988±5.14 0.984±0.70 17.755±8.23
ENSMUSG00000036339 ENSMUST00000111735 5.533±1.42 10.983±1.75 2.612±1.96 2.856±1.34 5.654±1.95 5.440±2.04 1.644±0.08 6.510±1.49 2.960±1.00 7.445±1.43 0.490±0.14 8.452±2.61 1.971±1.22 1.501±0.35
ENSMUST00000124720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.610±0.00 0.764±0.14 0.737±0.46
ENSMUST00000133744 2.330±0.00 10.883±4.14 N/A N/A 2.479±1.21 3.795±1.49 N/A N/A 1.952±0.49 3.652±0.00 N/A 7.557±2.61 N/A N/A
ENSMUST00000153765 N/A 11.666±3.52 N/A N/A 5.648±0.00 3.676±1.20 N/A N/A 1.442±0.11 N/A N/A 6.378±0.60 0.744±0.00 N/A
ENSMUST00000156480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000063885 ENSMUST00000081029 0.167±0.14 N/A 0.134±0.02 0.062±0.03 0.147±0.06 0.235±0.09 0.081±0.05 0.213±0.16 0.037±0.02 0.133±0.05 0.094±0.00 0.166±0.07 0.033±0.01 0.142±0.09
ENSMUST00000181413 0.178±0.03 0.090±0.02 0.035±0.00 0.085±0.05 0.357±0.29 0.224±0.16 0.114±0.01 0.170±0.11 0.056±0.04 0.216±0.09 0.029±0.00 0.260±0.22 0.036±0.02 0.139±0.00
ENSMUSG00000098192 ENSMUST00000182522 0.179±0.10 0.077±0.02 0.984±0.92 0.479±0.62 0.215±0.14 0.130±0.04 0.207±0.12 0.241±0.11 0.569±1.08 0.176±0.03 0.414±0.18 0.126±0.05 0.091±0.07 0.028±0.00

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