C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 260
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111735 Tmem260-001 ENSMUSG00000036339 10090 + 14:48446382-48515135 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111735
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111735 5.533±1.42 10.983±1.75 2.612±1.96 2.856±1.34 5.654±1.95 5.440±2.04 1.644±0.08 6.510±1.49 2.960±1.00 7.445±1.43 0.490±0.14 8.452±2.61 1.971±1.22 1.501±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000601 CIL_000601_0003 CGP 14:48120869-48515135
CIL_0007P7 CIL_0007P7_0002 UCNEbase 14:48393330-49089945
CIL_00083W CIL_00083W_0002 VISTA 14:48407510-49011185
CIL_000602 CIL_000602_0003 CGP 14:48446128-48667644

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261556 TMEM260-001 protein_coding Homo_sapiens 0 2067
ENST00000538838 TMEM260-201 protein_coding Homo_sapiens 0 1175
ENST00000539559 TMEM260-006 nonsense_mediated_decay Homo_sapiens 0 1029
ENST00000553335 TMEM260-014 processed_transcript Homo_sapiens 0 479
ENST00000554981 TMEM260-011 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000555497 TMEM260-004 nonsense_mediated_decay Homo_sapiens 0 769
ENST00000555905 TMEM260-013 nonsense_mediated_decay Homo_sapiens 0 364
ENST00000556079 TMEM260-010 retained_intron Homo_sapiens 0 475
ENST00000556422 TMEM260-002 nonsense_mediated_decay Homo_sapiens 0 1884
ENST00000556648 TMEM260-007 retained_intron Homo_sapiens 0 769
ENST00000556810 TMEM260-008 protein_coding Homo_sapiens 9.99995e-41 171
ENST00000556975 TMEM260-009 processed_transcript Homo_sapiens 0 289
ENST00000557626 TMEM260-005 retained_intron Homo_sapiens 0 883
ENST00000557657 TMEM260-003 retained_intron Homo_sapiens 0 782

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