C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 260
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000070269 TMEM260 9606 + 14:56488354-56650606 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261556 TMEM260-001 56579793-56649515 protein_coding
  ENST00000538838 TMEM260-201 56579884-56634953 protein_coding
  ENST00000539559 TMEM260-006 56579841-56648094 nonsense_mediated_decay
  ENST00000553335 TMEM260-014 56609245-56619466 processed_transcript
  ENST00000554981 TMEM260-011 56585694-56603941 retained_intron
  ENST00000555046 TMEM260-015 56636516-56650606 protein_coding
  ENST00000555497 TMEM260-004 56579826-56647852 nonsense_mediated_decay
  ENST00000555905 TMEM260-013 56609141-56633171 nonsense_mediated_decay
  ENST00000556079 TMEM260-010 56585693-56609189 retained_intron
  ENST00000556422 TMEM260-002 56579620-56649515 nonsense_mediated_decay
  ENST00000556648 TMEM260-007 56615451-56647922 retained_intron
  ENST00000556810 TMEM260-008 56488354-56585902 protein_coding
  ENST00000556929 TMEM260-012 56585855-56618663 nonsense_mediated_decay
  ENST00000556975 TMEM260-009 56579826-56593224 processed_transcript
  ENST00000557626 TMEM260-005 56579831-56616264 retained_intron
  ENST00000557657 TMEM260-003 56579825-56613910 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261556ENST00000539559ENST00000553335ENST00000555497ENST00000556079ENST00000556422ENST00000556648ENST00000556975ENST00000557657
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261556 0.660±0.00 0.810±0.00 N/A 1.040±0.00 1.016±0.00 N/A N/A 1.477±0.00 0.250±0.00 0.831±0.12 N/A 2.347±0.50 2.052±0.00 1.224±0.29
ENST00000539559 N/A N/A 0.814±0.00 N/A 2.236±0.00 1.008±0.00 N/A 0.284±0.00 0.811±0.00 2.110±0.00 N/A 2.627±0.00 N/A N/A
ENST00000553335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.590±0.00 4.999±0.00
ENST00000555497 N/A N/A N/A N/A N/A N/A N/A N/A 0.844±0.00 N/A N/A N/A N/A N/A
ENST00000556079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.673±0.00 N/A N/A N/A
ENST00000556422 N/A N/A N/A 0.722±0.00 N/A N/A N/A N/A N/A 0.498±0.00 0.155±0.00 N/A 0.410±0.08 N/A
ENST00000556648 N/A N/A N/A N/A N/A N/A 0.237±0.00 N/A N/A 1.664±0.00 N/A N/A N/A N/A
ENST00000556975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.235±0.00 N/A N/A N/A
ENST00000557657 N/A N/A 0.555±0.00 N/A N/A N/A 0.172±0.00 N/A N/A N/A 0.140±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000601 CIL_000601_0002 CGP 14:56117814-56650606
CIL_000602 CIL_000602_0002 CGP 14:56488354-56810479

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076362 tmem260 transmembrane protein 260 protein_coding Danio_rerio
ENSMUSG00000036339 Tmem260 transmembrane protein 260 protein_coding Mus_musculus

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