C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET binding factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144585 Sbf1-003 ENSMUSG00000036529 10090 - 15:89288283-89315255 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000144585
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000144585 16.230±1.71 18.988±3.80 9.617±0.24 10.497±2.06 16.023±7.35 14.114±2.19 11.205±1.65 9.202±2.03 5.582±0.99 16.728±4.28 10.819±0.54 16.922±4.54 9.389±4.24 20.503±6.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024L CIL_00024L_0002 CGP 15:89253035-89315311
CIL_0000IR CIL_0000IR_0002 CGP 15:89288236-89324728

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001558 TAS regulation of cell growth
GO:0001691 TAS pseudophosphatase activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0007283 IMP spermatogenesis
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0017112 IEA Rab guanyl-nucleotide exchange factor activity
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0043086 TAS negative regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000091599 sbf1-201 protein_coding Danio_rerio 0 414
ENSDART00000109452 sbf1-001 protein_coding Danio_rerio 0 414
ENST00000348911 SBF1-003 protein_coding Homo_sapiens 0 4418
ENST00000380817 SBF1-001 protein_coding Homo_sapiens 0 6817
ENST00000390679 SBF1-201 protein_coding Homo_sapiens 0 4420
ENST00000399627 SBF1-008 retained_intron Homo_sapiens 0 427
ENST00000418590 SBF1-005 protein_coding Homo_sapiens 0 1284
ENST00000438808 RP5-934G17.6-001 processed_pseudogene Homo_sapiens 0 2158
ENST00000444527 SBF1P1-001 processed_pseudogene Homo_sapiens 0 4634
ENST00000470434 SBF1-004 retained_intron Homo_sapiens 0 1977
ENST00000473724 SBF1-006 retained_intron Homo_sapiens 0 418
ENST00000476293 SBF1-007 processed_transcript Homo_sapiens 2.94273e-44 182
ENST00000477234 SBF1-009 retained_intron Homo_sapiens 0 359

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