C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: N-myc downstream regulated gene 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036564 Ndrg4 10090 + 8:95676980-95715119 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041318 Ndrg4-003 95678085-95714956 protein_coding
  ENSMUST00000073139 Ndrg4-001 95703037-95715119 protein_coding
  ENSMUST00000080666 Ndrg4-002 95703063-95714956 protein_coding
  ENSMUST00000159632 Ndrg4-008 95710466-95711551 retained_intron
  ENSMUST00000159851 Ndrg4-006 95709110-95711642 retained_intron
  ENSMUST00000160915 Ndrg4-005 95706574-95711144 processed_transcript
  ENSMUST00000160964 Ndrg4-004 95676980-95709144 protein_coding
  ENSMUST00000161314 Ndrg4-009 95711897-95713215 retained_intron
  ENSMUST00000162578 Ndrg4-007 95709907-95713918 processed_transcript
  ENSMUST00000166358 Ndrg4-010 95678245-95714952 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041318ENSMUST00000073139ENSMUST00000080666ENSMUST00000160915ENSMUST00000160964ENSMUST00000162578ENSMUST00000166358
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041318 N/A 3.027±0.30 N/A 134.325±0.00 N/A N/A N/A 1.713±0.36 N/A N/A 0.394±0.00 N/A 0.815±0.00 1.572±0.30
ENSMUST00000073139 3.238±0.00 3.740±0.27 6.197±0.84 N/A N/A 6.988±0.93 135.952±47.21 N/A 0.033±0.01 3.205±0.76 0.235±0.00 N/A N/A N/A
ENSMUST00000080666 7.606±1.68 7.751±1.97 13.907±2.05 176.590±110.02 7.733±2.17 4.243±0.66 N/A 5.045±0.63 0.483±0.38 4.198±0.13 0.491±0.21 9.986±4.67 2.358±1.57 7.564±1.10
ENSMUST00000160915 N/A N/A N/A N/A N/A N/A N/A N/A 0.143±0.09 N/A N/A N/A N/A N/A
ENSMUST00000160964 N/A 5.989±0.31 N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A
ENSMUST00000162578 N/A 17.057±4.20 N/A N/A N/A 7.077±1.75 N/A N/A 0.077±0.04 3.013±0.00 0.356±0.08 7.475±1.45 N/A N/A
ENSMUST00000166358 N/A 5.884±1.64 N/A N/A N/A N/A N/A N/A N/A N/A 0.227±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z0 CIL_0008Z0_0002 VISTA 8:95126508-95728314
CIL_0004IX CIL_0004IX_0002 CGP 8:95633559-95715119
CIL_0004IY CIL_0004IY_0002 CGP 8:95676980-95719010

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062236 ndrg4 N-myc downstream regulated gene 4 protein_coding Danio_rerio
ENSG00000103034 NDRG4 NDRG family member 4 protein_coding Homo_sapiens

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