C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: N-myc downstream regulated gene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073139 Ndrg4-001 ENSMUSG00000036564 10090 + 8:95703037-95715119 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderColonHeartLiverLungMuscleENSMUST00000073139
Transcript ID Adipose Adrenal Bladder Colon Heart Liver Lung Muscle
ENSMUST00000073139 3.238±0.00 3.740±0.27 6.197±0.84 6.988±0.93 135.952±47.21 0.033±0.01 3.205±0.76 0.235±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z0 CIL_0008Z0_0002 VISTA 8:95126508-95728314
CIL_0004IX CIL_0004IX_0002 CGP 8:95633559-95715119
CIL_0004IY CIL_0004IY_0002 CGP 8:95676980-95719010

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000151830 ndrg4-001 protein_coding Danio_rerio 0 752
ENSDART00000128808 ndrg4-004 protein_coding Danio_rerio 0 636
ENST00000258187 NDRG4-001 protein_coding Homo_sapiens 0 1158
ENST00000298684 NDRG2-004 protein_coding Homo_sapiens 1e-33 148
ENST00000298687 NDRG2-008 protein_coding Homo_sapiens 2e-33 148
ENST00000350792 NDRG2-003 protein_coding Homo_sapiens 2e-33 148
ENST00000356752 NDRG4-007 protein_coding Homo_sapiens 0 1158
ENST00000360463 NDRG2-002 protein_coding Homo_sapiens 2e-33 148
ENST00000394279 NDRG4-201 protein_coding Homo_sapiens 0 1158
ENST00000394282 NDRG4-002 protein_coding Homo_sapiens 0 1158
ENST00000397844 NDRG2-001 protein_coding Homo_sapiens 5e-19 100
ENST00000397847 NDRG2-007 protein_coding Homo_sapiens 5e-29 134
ENST00000397851 NDRG2-010 protein_coding Homo_sapiens 2e-33 148
ENST00000397853 NDRG2-005 protein_coding Homo_sapiens 2e-33 148
ENST00000397856 NDRG2-201 protein_coding Homo_sapiens 1e-33 148
ENST00000397858 NDRG2-202 protein_coding Homo_sapiens 2e-33 148
ENST00000403829 NDRG2-016 protein_coding Homo_sapiens 1e-33 148
ENST00000421602 NDRG4-003 retained_intron Homo_sapiens 0 1478
ENST00000553503 NDRG2-011 protein_coding Homo_sapiens 2e-33 148
ENST00000553593 NDRG2-069 protein_coding Homo_sapiens 8e-34 148
ENST00000553793 NDRG2-072 retained_intron Homo_sapiens 6e-34 148
ENST00000554104 NDRG2-017 protein_coding Homo_sapiens 2e-33 148
ENST00000554143 NDRG2-009 protein_coding Homo_sapiens 2e-33 148
ENST00000555158 NDRG2-012 protein_coding Homo_sapiens 2e-33 148
ENST00000555650 NDRG2-074 retained_intron Homo_sapiens 3e-20 104
ENST00000556008 NDRG2-034 protein_coding Homo_sapiens 2e-30 137
ENST00000556147 NDRG2-013 protein_coding Homo_sapiens 2e-33 148
ENST00000556716 NDRG2-018 retained_intron Homo_sapiens 0.000000000000005 88
ENST00000557353 NDRG2-014 nonsense_mediated_decay Homo_sapiens 2e-33 148
ENST00000557416 NDRG2-073 retained_intron Homo_sapiens 2e-23 113
ENST00000561681 NDRG4-020 retained_intron Homo_sapiens 0 252
ENST00000561720 NDRG4-037 retained_intron Homo_sapiens 0 832
ENST00000561724 NDRG4-038 protein_coding Homo_sapiens 0 455
ENST00000561738 NDRG4-043 protein_coding Homo_sapiens 0 789
ENST00000561779 NDRG4-045 protein_coding Homo_sapiens 0 281
ENST00000562350 NDRG4-016 retained_intron Homo_sapiens 7e-37 158
ENST00000562725 NDRG4-041 processed_transcript Homo_sapiens 0 261
ENST00000562731 NDRG4-029 protein_coding Homo_sapiens 0 361
ENST00000562764 NDRG4-032 nonsense_mediated_decay Homo_sapiens 0 298
ENST00000562930 NDRG4-031 nonsense_mediated_decay Homo_sapiens 0 366
ENST00000562999 NDRG4-010 protein_coding Homo_sapiens 0 1140
ENST00000563022 NDRG4-023 processed_transcript Homo_sapiens 0 246
ENST00000563209 NDRG4-014 retained_intron Homo_sapiens 0 267
ENST00000563317 NDRG4-024 retained_intron Homo_sapiens 1e-19 100
ENST00000563799 NDRG4-004 protein_coding Homo_sapiens 0 1011
ENST00000563978 NDRG4-027 protein_coding Homo_sapiens 0 326
ENST00000564126 NDRG4-033 protein_coding Homo_sapiens 0 590
ENST00000564207 NDRG4-040 protein_coding Homo_sapiens 0 472
ENST00000564486 NDRG4-052 protein_coding Homo_sapiens 0 484
ENST00000564867 NDRG4-050 nonsense_mediated_decay Homo_sapiens 0 294
ENST00000564960 NDRG4-022 retained_intron Homo_sapiens 0 405
ENST00000565088 NDRG4-044 protein_coding Homo_sapiens 0 438
ENST00000565304 NDRG4-054 protein_coding Homo_sapiens 0 484
ENST00000565430 NDRG4-051 protein_coding Homo_sapiens 0 305
ENST00000565434 NDRG4-048 protein_coding Homo_sapiens 0 424
ENST00000565981 NDRG4-012 retained_intron Homo_sapiens 0 353
ENST00000566061 NDRG4-042 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000566192 NDRG4-008 protein_coding Homo_sapiens 0 1267
ENST00000566265 NDRG4-013 retained_intron Homo_sapiens 0 261
ENST00000566585 NDRG4-021 retained_intron Homo_sapiens 0 577
ENST00000566618 NDRG4-026 protein_coding Homo_sapiens 0 645
ENST00000566656 NDRG4-025 protein_coding Homo_sapiens 0 460
ENST00000567063 NDRG4-053 protein_coding Homo_sapiens 0 549
ENST00000567454 NDRG4-035 protein_coding Homo_sapiens 0 322
ENST00000567667 NDRG4-049 protein_coding Homo_sapiens 0 453
ENST00000568005 NDRG4-017 retained_intron Homo_sapiens 0 449
ENST00000568424 NDRG4-030 protein_coding Homo_sapiens 0 204
ENST00000568464 NDRG4-028 nonsense_mediated_decay Homo_sapiens 0 296
ENST00000568640 NDRG4-006 protein_coding Homo_sapiens 0 1158
ENST00000568999 NDRG4-039 protein_coding Homo_sapiens 0 484
ENST00000569026 NDRG4-019 protein_coding Homo_sapiens 0 593
ENST00000569404 NDRG4-046 protein_coding Homo_sapiens 0 383
ENST00000569408 NDRG4-018 protein_coding Homo_sapiens 1e-38 163
ENST00000569539 NDRG4-055 protein_coding Homo_sapiens 0 726
ENST00000569923 NDRG4-005 protein_coding Homo_sapiens 0 1158
ENST00000570248 NDRG4-009 protein_coding Homo_sapiens 0 1574

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