C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: methyl-CpG binding domain protein 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036792 Mbd5 10090 + 2:48949510-49322284 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047413 Mbd5-001 49245969-49317069 protein_coding
  ENSMUST00000112745 Mbd5-005 48949510-49260139 protein_coding
  ENSMUST00000112754 Mbd5-003 49245812-49316972 protein_coding
  ENSMUST00000122841 Mbd5-002 49256561-49316998 protein_coding
  ENSMUST00000127085 Mbd5-004 48949510-49245737 processed_transcript
  ENSMUST00000132717 Mbd5-006 49272184-49322284 nonsense_mediated_decay
  ENSMUST00000142250 Mbd5-009 48949962-49021440 processed_transcript
  ENSMUST00000147023 Mbd5-011 48950149-49065517 processed_transcript
  ENSMUST00000147055 Mbd5-007 48950143-49245557 processed_transcript
  ENSMUST00000148796 Mbd5-010 48949963-48954067 processed_transcript
  ENSMUST00000154653 Mbd5-008 48949518-49119012 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000047413ENSMUST00000112745ENSMUST00000112754ENSMUST00000122841ENSMUST00000148796
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000047413 1.674±0.10 N/A N/A 1.172±0.18 1.350±0.00 N/A 1.374±0.26 0.573±0.00 1.313±0.00 1.233±0.09 N/A 0.843±0.00
ENSMUST00000112745 2.874±0.00 N/A N/A 2.262±0.00 N/A 1.653±0.00 1.155±0.00 1.746±0.33 N/A 2.352±0.61 2.439±0.00 N/A
ENSMUST00000112754 N/A N/A 7.318±0.00 1.594±0.13 N/A N/A N/A N/A N/A 3.727±0.38 N/A 1.593±0.33
ENSMUST00000122841 N/A N/A N/A N/A N/A N/A 1.354±0.20 N/A N/A N/A N/A 2.422±0.53
ENSMUST00000148796 N/A 20.226±1.95 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MB CIL_0006MB_0002 CGP 2:48814109-48950277
CIL_0006MC CIL_0006MC_0002 CGP 2:48902824-49322284
CIL_000210 CIL_000210_0002 CGP 2:48949510-49551948

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0007399 IEA nervous system development
GO:0010369 IEA chromocenter
GO:0040014 IMP regulation of multicellular organism growth
GO:0042593 IMP glucose homeostasis
GO:0044708 IEA single-organism behavior
GO:0060399 IMP positive regulation of growth hormone receptor signaling pathway
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059581 mbd5 methyl-CpG binding domain protein 5 protein_coding Danio_rerio
ENSG00000204406 MBD5 methyl-CpG binding domain protein 5 protein_coding Homo_sapiens

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