C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006MC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000115947-ENSG00000204406 CGP 9606 2:147930397-148518236
GeneTranscriptPositionBiotype
ENSG00000121989 (ACVR2A)
activin A receptor, type IIA 		ENST00000241416 (ACVR2A-001) 147844517-147930824 protein_coding
ENST00000404590 (ACVR2A-002) 147844616-147927929 protein_coding
ENST00000462659 (ACVR2A-006) 147844524-147899898 processed_transcript
ENST00000465329 (ACVR2A-003) 147845029-147897114 retained_intron
ENST00000487959 (ACVR2A-005) 147844517-147896447 processed_transcript
ENST00000495775 (ACVR2A-004) 147925687-147927504 processed_transcript
ENST00000535787 (ACVR2A-201) 147844517-147930826 protein_coding
ENSG00000212181 (SNORA48)
Small nucleolar RNA SNORA48 		ENST00000390879 (SNORA48.1-201) 148260574-148260708 snoRNA
ENSG00000224007 (AC019070.1)
 ENST00000415008 (AC019070.1-001) 148295656-148296679 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0006MC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026761-ENSMUSG00000036792 CGP 10090 2:48902824-49322284
GeneTranscriptPositionBiotype
ENSMUSG00000026761 (Orc4)
origin recognition complex, subunit 4 		ENSMUST00000028098 (Orc4-001) 48902824-48949276 protein_coding
ENSMUST00000090976 (Orc4-002) 48931958-48949234 protein_coding
ENSMUST00000123271 (Orc4-005) 48936844-48950277 protein_coding
ENSMUST00000123789 (Orc4-009) 48929626-48940365 processed_transcript
ENSMUST00000123809 (Orc4-007) 48936477-48949232 processed_transcript
ENSMUST00000128618 (Orc4-012) 48905414-48912575 processed_transcript
ENSMUST00000141441 (Orc4-003) 48911404-48949234 processed_transcript
ENSMUST00000142851 (Orc4-008) 48917205-48950039 protein_coding
ENSMUST00000149679 (Orc4-006) 48936773-48949241 protein_coding
ENSMUST00000150492 (Orc4-011) 48905379-48910668 processed_transcript
ENSMUST00000153150 (Orc4-010) 48933153-48934202 processed_transcript
ENSMUST00000154784 (Orc4-004) 48905316-48949231 processed_transcript
ENSMUST00000156956 (Orc4-013) 48904880-48910013 processed_transcript
ENSMUSG00000036792 (Mbd5)
methyl-CpG binding domain protein 5 		ENSMUST00000047413 (Mbd5-001) 49245969-49317069 protein_coding
ENSMUST00000112745 (Mbd5-005) 48949510-49260139 protein_coding
ENSMUST00000112754 (Mbd5-003) 49245812-49316972 protein_coding
ENSMUST00000122841 (Mbd5-002) 49256561-49316998 protein_coding
ENSMUST00000127085 (Mbd5-004) 48949510-49245737 processed_transcript
ENSMUST00000132717 (Mbd5-006) 49272184-49322284 nonsense_mediated_decay
ENSMUST00000142250 (Mbd5-009) 48949962-49021440 processed_transcript
ENSMUST00000147023 (Mbd5-011) 48950149-49065517 processed_transcript
ENSMUST00000147055 (Mbd5-007) 48950143-49245557 processed_transcript
ENSMUST00000148796 (Mbd5-010) 48949963-48954067 processed_transcript
ENSMUST00000154653 (Mbd5-008) 48949518-49119012 processed_transcript
ENSMUSG00000052155 (Acvr2a)
activin receptor IIA 		ENSMUST00000063886 (Acvr2a-001) 48814109-48903269 protein_coding
ENSMUST00000156681 (Acvr2a-002) 48890389-48900248 processed_transcript
ENSMUSG00000080937 (Gm13510)
predicted gene 13510 		ENSMUST00000118659 (Gm13510-001) 49185018-49185446 processed_pseudogene
ENSMUSG00000081272 (Gm13509)
predicted gene 13509 		ENSMUST00000119733 (Gm13509-001) 49308155-49309462 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006MC_0001ENSG00000121989ENST00000241416ENST00000404590ENST00000462659ENST00000465329ENST00000487959ENST00000495775ENST00000535787ENSG00000212181ENST00000390879ENSG00000224007ENST00000415008CIL_0006MC_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006MC_0001ENSG00000121989ENST00000241416ENST00000404590ENST00000535787ENSG00000212181ENST00000390879ENSG00000224007ENST00000415008CIL_0006MC_0002ENSMUSG00000026761ENSMUST00000028098ENSMUST00000141441ENSMUST00000142851ENSMUST00000154784ENSMUSG00000036792ENSMUST00000047413ENSMUST00000112745ENSMUST00000112754ENSMUST00000122841ENSMUST00000148796ENSMUSG00000052155ENSMUST00000063886ENSMUST00000156681ENSMUSG00000080937ENSMUST00000118659ENSMUSG00000081272ENSMUST00000119733
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000121989 ENST00000241416 1.262±0.00 1.910±0.00 2.349±0.00 N/A 1.927±0.00 N/A N/A N/A 0.696±0.00 4.268±0.00 1.365±0.00 1.774±0.00 1.398±0.64 2.297±0.00
ENST00000404590 2.774±0.00 N/A N/A 8.084±0.00 5.617±0.00 7.355±0.00 N/A 2.644±0.00 10.506±0.00 N/A 2.981±0.00 N/A 1.746±0.04 4.789±0.00
ENST00000462659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495775 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535787 N/A N/A N/A N/A N/A 1.436±0.00 N/A 1.567±0.00 N/A 0.982±0.00 N/A N/A 0.689±0.00 N/A
ENSG00000212181 ENST00000390879 N/A N/A 8.680±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.637±0.00 N/A
ENSG00000224007 ENST00000415008 0.009±0.00 0.035±0.00 0.246±0.00 0.047±0.04 0.141±0.00 0.187±0.12 0.042±0.01 N/A 0.206±0.00 0.343±0.31 N/A 0.019±0.00 N/A 0.008±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026761 ENSMUST00000028098 3.811±0.50 N/A 7.881±0.77 16.595±3.03 2.869±0.17 N/A 3.117±0.25 2.996±0.67 3.992±1.88 5.084±0.77 2.730±0.17 5.257±0.05 6.657±2.43 N/A
ENSMUST00000090976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141441 N/A N/A N/A 15.833±0.00 N/A N/A N/A N/A 4.929±0.00 N/A N/A 13.896±5.90 N/A N/A
ENSMUST00000142851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.429±1.58 N/A
ENSMUST00000149679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.556±2.64 N/A
ENSMUST00000156956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000036792 ENSMUST00000047413 1.674±0.10 N/A N/A N/A 1.172±0.18 1.350±0.00 N/A 1.374±0.26 0.573±0.00 1.313±0.00 N/A 1.233±0.09 N/A 0.843±0.00
ENSMUST00000112745 2.874±0.00 N/A N/A N/A 2.262±0.00 N/A 1.653±0.00 1.155±0.00 1.746±0.33 N/A N/A 2.352±0.61 2.439±0.00 N/A
ENSMUST00000112754 N/A N/A N/A 7.318±0.00 1.594±0.13 N/A N/A N/A N/A N/A N/A 3.727±0.38 N/A 1.593±0.33
ENSMUST00000122841 N/A N/A N/A N/A N/A N/A N/A 1.354±0.20 N/A N/A N/A N/A N/A 2.422±0.53
ENSMUST00000127085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148796 N/A 20.226±1.95 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000052155 ENSMUST00000063886 4.305±0.94 8.180±2.69 5.497±0.07 17.193±10.16 4.539±1.42 5.597±2.36 3.113±0.25 3.341±0.45 3.203±0.64 8.385±1.14 2.468±0.60 5.910±2.08 4.162±1.68 3.227±1.23
ENSMUST00000156681 N/A N/A N/A 22.416±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 12.224±0.31 11.881±0.00
ENSMUSG00000080937 ENSMUST00000118659 0.318±0.11 0.492±0.18 0.291±0.05 0.448±0.07 0.273±0.02 0.412±0.13 0.213±0.00 0.283±0.25 0.093±0.05 0.303±0.10 N/A 0.149±0.00 0.252±0.01 0.268±0.11
ENSMUSG00000081272 ENSMUST00000119733 9.554±0.97 1.859±0.44 2.980±0.97 11.726±5.71 6.467±1.15 3.767±0.85 3.521±0.56 6.026±1.68 5.664±4.30 5.833±0.32 0.273±0.15 10.274±7.55 1.792±2.21 1.428±0.53

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