C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: methyl-CpG binding domain protein 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204406 MBD5 9606 + 2:148021011-148518236 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000404807 MBD5-004 148458630-148513451 protein_coding
  ENST00000407073 MBD5-001 148021011-148513451 protein_coding
  ENST00000416015 MBD5-005 148468725-148518236 protein_coding
  ENST00000469438 MBD5-009 148021593-148041365 processed_transcript
  ENST00000470063 MBD5-011 148021464-148178793 processed_transcript
  ENST00000473478 MBD5-008 148021439-148233327 processed_transcript
  ENST00000478190 MBD5-010 148021238-148025058 processed_transcript
  ENST00000478804 MBD5-002 148068572-148458317 processed_transcript
  ENST00000488372 MBD5-007 148021011-148458497 processed_transcript
  ENST00000496158 MBD5-006 148021027-148458358 processed_transcript
  ENST00000496893 MBD5-003 148485116-148513477 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000407073
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000407073 1.348±0.00 2.175±0.00 3.831±0.21 2.135±0.19 2.685±0.00 2.226±0.11 4.256±0.00 2.453±0.64 1.587±0.00 2.222±0.21 0.648±0.01 3.774±1.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MB CIL_0006MB_0001 CGP 2:147844517-148021604
CIL_0006MC CIL_0006MC_0001 CGP 2:147930397-148518236
CIL_000210 CIL_000210_0001 CGP 2:148021011-148787568

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005634 IEA nucleus
GO:0007399 IMP nervous system development
GO:0010369 IDA chromocenter
GO:0040014 ISS regulation of multicellular organism growth
GO:0042593 ISS glucose homeostasis
GO:0044708 IMP single-organism behavior
GO:0060399 ISS positive regulation of growth hormone receptor signaling pathway
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059581 mbd5 methyl-CpG binding domain protein 5 protein_coding Danio_rerio
ENSMUSG00000036792 Mbd5 methyl-CpG binding domain protein 5 protein_coding Mus_musculus

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