C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat domain 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036918 Ttc7 10090 + 17:87282886-87381769 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041110 Ttc7-001 87282886-87381769 protein_coding
  ENSMUST00000125875 Ttc7-002 87282905-87371904 protein_coding
  ENSMUST00000126497 Ttc7-003 87282893-87292929 processed_transcript
  ENSMUST00000127970 Ttc7-004 87309332-87330077 processed_transcript
  ENSMUST00000144204 Ttc7-008 87282951-87361921 nonsense_mediated_decay
  ENSMUST00000148126 Ttc7-007 87378853-87381769 processed_transcript
  ENSMUST00000148554 Ttc7-006 87330214-87339949 processed_transcript
  ENSMUST00000153014 Ttc7-005 87323068-87334273 retained_intron
  ENSMUST00000154255 Ttc7-009 87292811-87380086 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041110ENSMUST00000125875ENSMUST00000126497ENSMUST00000144204ENSMUST00000148126ENSMUST00000154255
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041110 4.836±1.83 2.671±0.72 4.555±0.75 1.100±0.53 9.425±2.45 18.540±1.67 1.358±0.22 14.616±1.74 6.692±2.23 12.513±0.56 1.158±0.10 3.391±0.98 4.334±0.89 9.954±4.30
ENSMUST00000125875 N/A N/A N/A N/A 2.069±0.00 N/A N/A N/A N/A N/A 1.022±0.27 0.457±0.00 2.901±1.85 N/A
ENSMUST00000126497 N/A 10.640±2.38 N/A N/A 23.889±1.35 16.279±1.80 N/A N/A 5.949±0.00 13.844±0.00 N/A 10.073±1.96 N/A N/A
ENSMUST00000144204 N/A N/A N/A 0.601±0.12 N/A N/A N/A N/A N/A N/A N/A N/A 1.288±0.00 11.248±1.37
ENSMUST00000148126 3.981±0.55 4.019±0.91 N/A 0.569±0.08 9.795±1.12 11.010±1.06 3.904±0.80 10.888±0.92 4.962±1.41 7.189±0.18 2.617±0.54 2.723±0.89 5.589±0.55 N/A
ENSMUST00000154255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.876±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D2 CIL_0008D2_0002 VISTA 17:87075116-87678515
CIL_0003T5 CIL_0003T5_0003 CGP 17:87254658-87381769
CIL_0003T6 CIL_0003T6_0003 CGP 17:87282886-87427741

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006879 IMP cellular iron ion homeostasis
GO:0030097 IMP hemopoiesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074760 ttc7a tetratricopeptide repeat domain 7A protein_coding Danio_rerio
ENSG00000068724 TTC7A tetratricopeptide repeat domain 7A protein_coding Homo_sapiens

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