C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetratricopeptide repeat domain 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144204 Ttc7-008 ENSMUSG00000036918 10090 + 17:87282951-87361921 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainPlacentaTestisENSMUST00000144204
Transcript ID Brain Placenta Testis
ENSMUST00000144204 0.601±0.12 1.288±0.00 11.248±1.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D2 CIL_0008D2_0002 VISTA 17:87075116-87678515
CIL_0003T5 CIL_0003T5_0003 CGP 17:87254658-87381769
CIL_0003T6 CIL_0003T6_0003 CGP 17:87282886-87427741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006879 IMP cellular iron ion homeostasis
GO:0030097 IMP hemopoiesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319190 TTC7A-001 protein_coding Homo_sapiens 0 1413
ENST00000394850 TTC7A-002 protein_coding Homo_sapiens 0 1413
ENST00000409245 TTC7A-005 protein_coding Homo_sapiens 0 1413
ENST00000409825 TTC7A-006 nonsense_mediated_decay Homo_sapiens 0 1712
ENST00000440051 TTC7A-010 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000441914 TTC7A-004 nonsense_mediated_decay Homo_sapiens 0 843
ENST00000461601 TTC7A-003 processed_transcript Homo_sapiens 0 2305
ENST00000474321 TTC7A-009 processed_transcript Homo_sapiens 0 568
ENST00000484061 TTC7A-008 retained_intron Homo_sapiens 0 656
ENST00000491786 TTC7A-007 retained_intron Homo_sapiens 0 1260

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