C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 4932438A13 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037270 4932438A13Rik 10090 + 3:36863106-37053033 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057272 4932438A13Rik-201 36863106-37053033 protein_coding
  ENSMUST00000108145 4932438A13Rik-017 36864469-36932026 retained_intron
  ENSMUST00000123916 4932438A13Rik-011 36863121-36943396 retained_intron
  ENSMUST00000128061 4932438A13Rik-005 36895373-36948154 nonsense_mediated_decay
  ENSMUST00000129721 4932438A13Rik-013 36870011-36889052 retained_intron
  ENSMUST00000129787 4932438A13Rik-016 36890819-36895463 retained_intron
  ENSMUST00000136287 4932438A13Rik-012 36863121-36889045 retained_intron
  ENSMUST00000136746 4932438A13Rik-010 37037823-37040880 retained_intron
  ENSMUST00000138152 4932438A13Rik-003 37014504-37030026 protein_coding
  ENSMUST00000138950 4932438A13Rik-002 37011708-37053014 protein_coding
  ENSMUST00000139219 4932438A13Rik-015 36946221-36948149 retained_intron
  ENSMUST00000140480 4932438A13Rik-007 37018856-37023854 retained_intron
  ENSMUST00000141740 4932438A13Rik-009 37011577-37053016 protein_coding
  ENSMUST00000143675 4932438A13Rik-014 36908148-36920148 retained_intron
  ENSMUST00000146948 4932438A13Rik-006 37007186-37053015 protein_coding
  ENSMUST00000148698 4932438A13Rik-004 37024426-37037840 retained_intron
  ENSMUST00000152564 4932438A13Rik-001 36869998-37053033 protein_coding
  ENSMUST00000152881 4932438A13Rik-008 36863156-36948152 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057272ENSMUST00000123916ENSMUST00000138950ENSMUST00000141740ENSMUST00000146948ENSMUST00000148698ENSMUST00000152564
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057272 0.950±0.16 1.045±0.30 0.788±0.11 1.421±0.30 1.511±0.52 0.735±0.18 0.861±0.27 1.469±0.34 0.483±0.11 2.232±0.70 0.469±0.16 0.799±0.26 1.534±0.00 4.840±0.07
ENSMUST00000123916 N/A N/A N/A N/A N/A 1.870±0.42 N/A N/A 2.189±0.00 N/A N/A 2.004±0.00 N/A N/A
ENSMUST00000138950 2.017±0.19 1.067±0.07 4.777±0.51 3.694±0.00 2.592±0.87 2.191±0.55 1.215±0.00 2.588±0.00 2.073±0.74 N/A 1.231±0.28 3.272±1.94 6.500±2.55 7.212±0.82
ENSMUST00000141740 N/A N/A 1.987±0.41 8.395±0.79 N/A 1.614±0.50 1.485±0.50 N/A 1.019±0.09 2.331±0.00 3.125±0.53 N/A N/A 10.302±0.00
ENSMUST00000146948 1.694±0.20 1.274±0.24 3.152±0.00 2.996±0.00 2.807±0.38 2.140±0.59 0.923±0.00 2.941±0.45 1.735±0.38 2.783±0.00 0.990±0.17 3.247±1.33 6.799±3.54 N/A
ENSMUST00000148698 N/A 3.203±0.00 N/A N/A N/A 2.113±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152564 1.629±0.00 N/A N/A 1.743±0.51 1.109±0.39 N/A 0.911±0.07 N/A 0.438±0.00 N/A 0.512±0.13 1.461±0.32 2.617±0.02 4.003±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AC CIL_0007AC_0002 CGP 3:36620482-37053033
CIL_0007AD CIL_0007AD_0002 CGP 3:36863106-37121924

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001558 NAS regulation of cell growth
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 NAS nucleus
GO:0006629 NAS lipid metabolic process
GO:0007283 NAS spermatogenesis
GO:0016021 IEA integral component of membrane
GO:0019915 NAS lipid storage
GO:0045444 NAS fat cell differentiation
GO:0051647 NAS nucleus localization
GO:0060612 NAS adipose tissue development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062330 si:ch211-233a24.2 si:ch211-233a24.2 protein_coding Danio_rerio
ENSG00000138688 KIAA1109 KIAA1109 protein_coding Homo_sapiens

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